Query= MSMg01no195_n20.b1 MSMg01no195_n20.b1 CHROMAT_FILE:
MSMg01no195_n20.b1 PHD_FILE: MSMg01no195_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:12 2005
(685 letters)
>mm_chr10_93919004_93920087
Length = 1084
Score = 1270 bits (657), Expect = 0.0
Identities = 675/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagtctgtctctcctcggcacagacagaacggtacccggagaccacagagtagc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtctgtct-tcctcggcacagacagaacggtacccggagaccacagagtagc 263
Query: 65 cattgactagaaaagaggtttgatttttacaagtaaatagtctaggtgttgctcagagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgactagaaaagaggtttgatttttacaagtaaatagtctaggtgttgctcagagag 323
Query: 125 tgaggacttgtttagcatatggagtgacctgggtttaagctccagcactgtatcattgtc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 tgaggacttgtttagcatatggagtgacctgggtttaagctccagcactgtatcgttgtc 383
Query: 185 atcatcatcaccatcatcattatcatcatcttcaccaccaccagcagtaactaggacttc 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcgtcatcaccatcatcattatcatcatcttcaccaccaccagcagtaactaggacttc 443
Query: 245 ctgtattctggtgaaatcaaaagacattagcttttgagtcttagctctgtttaatgtgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtattctggtgaaatcaaaagacattagcttttgagtcttagctctgtttaatgtgaa 503
Query: 305 gatatttaaataacaacagcctatgccttcatttgtctataaaataagaataacacttcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 gatatttaaataacaacagcctatgccttcatttgtctataaaataagaataacactccc 563
Query: 365 tacttaaacctgcatacacagtgacactatgtttaagtgggacagtagaaaggaaagtgt 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacgtaaacctgcatacacagtgacactatgtttaagtgggacagtagaaaggaaagtgt 623
Query: 425 tccctatggagttcttggctggtattctcatttgtcatctacctcccattcccacagatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccctatggagttcttggctggtattctcatttgtcatctacctcccattcccacagatc 683
Query: 485 ttaaagcttcaccttaggtttggcctaatgattttttttttttacagtgttatagtcctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaaagcttcaccttaggtttggcctaatgattttttttttttacagtgttatagtcctg 743
Query: 545 ggccagggagatgactcaattggcaaaacccttgccatgcaaacatgacagcctgagctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggccagggagatgactcaattggcaaaacccttgccatgcaaacatgacagcctgagctt 803
Query: 605 tggtcaccagctcccgtgtaaatagccaggcgtggttagtgtgcacctgtatcccagtgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 804 tggtcaccagctcccgtgtaaatagccaggcgtggttagtgtgcacctgtatctcagtgt 863
Query: 665 tgagaaggagacagaggcatc 685
|||||||||||||||||||||
Sbjct: 864 tgagaaggagacagaggcatc 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_n20.g1 MSMg01no195_n20.g1 CHROMAT_FILE:
MSMg01no195_n20.g1 PHD_FILE: MSMg01no195_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:12 2005
(656 letters)
>mm_chr10_93948353_93949408
Length = 1056
Score = 1170 bits (605), Expect = 0.0
Identities = 644/657 (98%), Gaps = 2/657 (0%)
Strand = Plus / Minus
Query: 1 caatctcactttatgaatgcacggcactcataccacacatccagccagccagactgcatt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 856 caatctcactttatgaatgcagggcactcataccacacatccagccagccagactgcatt 797
Query: 61 tcagtggctcttagcatttccagcatttcacagtgtagcagggctgttgatccaaaagcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 796 tcagtggctcttagcatttccagcatttcacagtgtagcagggctgttgatctaaaagcc 737
Query: 121 ttcagacaaggctcaagaggcacaggggagggtaaggtaggtggcgggagctgatctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttcagacaaggctcaagaggcacaggggagggtaaggtaggtggcgggagctgatctgct 677
Query: 181 tctgaagttcctgctaatttagaaggacatttaaagctgaagcataatttctaagaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tctgaagttcctgctaatttagaaggacatttaaagctgaagcataatttctaagaggct 617
Query: 241 tacagctcttcatggtgcagtggaagaggaaatgagctaggacttaaaaccctaaggccc 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tacagctcagcatggtgcagtggaagaggaaatgagctaggacttaaaaccctaaggccc 557
Query: 301 catcatttggtttcagtacaatctctcatacttccaatgatgaaatgggaggcctatgag 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 catcatttggtttcagcacaatctctcatacttccaatgatgaaatgggaggcctatgag 497
Query: 361 gttgagtcaattgcccaagaccatggaggcaagagtccatctttagactcattcaaggat 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 496 gttgagtcaattgcccaagaccatggaagcaagagtccatctttagactcattcaaggat 437
Query: 421 gtaatccaggctctgtgccgcttgctctaagaaggtattgttccccccacagtatttcaa 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtaatccaggctctgtgctgcttgctctaagaaggtattgttccccccacagtatttcaa 377
Query: 481 gccccaaacccacatcagtatcttaaaatgcttgttggccaagacactcattggaatact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gccccaaacccacatcagtatcttaaaatgcttgttggccaagacactcattggaatact 317
Query: 541 aaccacga-atccacccatctaagaattgataacaattacacatatgggcaaaccagcgc 599
|||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 316 aaccac-acacccacccatctaagaattgataacacttacacatatgggcaaaccagcgg 258
Query: 600 tttgataaaagctggactaataacctggtccatcatcaatacatctttcaaaaagca 656
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttgataaaagctggaccaataacctggtccatcatcaatacatctttcaaaaagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
