BAC Information

Click to search

BAC

Clone NameMSMg01-196E04
Chromosome10 (Build37)
Map Location 128,569,580 - 128,569,690
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769
Downstream geneOlfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196E04.T7 (MSMg01no196_e04.b1)MSMg01-196E04.TJ (MSMg01no196_e04.g1)
ACCAG384442AG384443
length791739
length of high quality
(start - end)
122 (12 - 133)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no196_e04.b1 PHD_FILE: MSMg01no196_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:45 2005CHROMAT_FILE: MSMg01no196_e04.g1 PHD_FILE: MSMg01no196_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATTCGGAGAGGATCCGCGGAATTCTTGTTACTCAGTGCAAGGTT
ATTGTTTTTTTTTTGTGTGTGTTTTATTTTGATCATCCATTTGATCATGG
ATGAGCTAATGAATGCCTATATAATAAGTCAAGGATTTAGTTGTGGCGAG
TTATATATAGAATAACAAATATCTTGCTTTTTCCTCTTATTCACATTTTT
ATTACTCTTCTCATTTCGAGTTTATGTTTTGATTCCTATCACCTCTCTCT
CCCCCTCTCCCCAGTCCATACATTTTGTTTTTACTAATTTATTCTTTTCT
TTCTATTTTCCCCCCTCTCTCCCCTTTCTTTCTTCTTTTTTTTCTCTTTC
TCTCCCTCTCCTTCCTTTTTCTCCCCCTTCCTTTTTTTTTTCCCCCACCC
CCCTCTTTTTTTCTTTTTTTTTCTTTTCCCTCTTCCCCCCTCTCTCCCTA
TTTTCCCCCTCCCTCCCCTCTCCTTCCTCTTCTTCTCTTCTCCCCTTTTC
TCTTATTTCTTTTTTCTTCTATTTTTTTCCCCTTTTCCCCCACCTTCTCT
CCCTCTCCCCCCCCCTTCCTCTTTCATCCCCCCTTCTCTTTCTTTCCATT
TTTCATATATCCCCCATCCCCCCCCCTTAAAATTATCTCTACACTTATCT
CTCCTTCTTATTTTTTCTACCCTTATACTCCCTATTCCCCCATTCATTTA
TCCTTACTCCACCACATCTCCCAATCCTTTCCTATAAACCACCCTATTAC
TTCTCCTCCTCTCCCACACTTCTCACATCCTCTCTCTCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACATTTCACATCTATTTAACAT
ATATACATTGTATGCAAATAAATAAATAAAATGAAAGAGTGGGAATAGAA
AGCAAGACTACAACCCAAAACAACAAAATCTTGTAAATTAATATCCCAGT
ATCAAGAACATATGGTGGTCTGATGTAATTCCTATTGACTTTAGCAATAC
TGTCATTGCAGCAACACCTGTATCTCACATAGGTGCTCTCTTGGGATGAC
ACCACTCATTACTTACATCATTCCTTAGCAGATATTCCATATTCCTGTCC
TGTCTAACTATGTTTAGGAACTCTGACACTACCACCCACTACCTGGTTAT
TAATGATCACACTTAACCACCGCTAACATGAAAAATATCACATACGACAG
AATTAAATACAAAATATACAGTTTAAAAGAAAGAGAACCATAAAGCTTGA
TGTTGCAGACAAGGCTTGGAATGGCACAGAGAAAGAGTTTACGTCCAATC
TCAATCTGGAATGTATACTCTACCCATATAAGCTTCCCACTTTTATATGG
AACACGATTGAATTTTTATCCGTCCTACAAAGACACACCAATTATATGCC
CTAATCCCCTATCCATACAACCCCCAATCCTCTATTTCTTCTTCTTCTCC
CATTTGTCACCTCTACTTCTCTCCCTTTATCCCCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_e04.b1 MSMg01no196_e04.b1 CHROMAT_FILE:
MSMg01no196_e04.b1 PHD_FILE: MSMg01no196_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:45 2005
         (122 letters)



>mm_chr10_128569367_128569890
          Length = 524

 Score =  192 bits (99), Expect = 9e-54
 Identities = 108/111 (97%), Gaps = 2/111 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcttgttac-tcagtgcaaggttattgttttttttt-tgtgtgtgttttattttga 71
           ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 214 gaattcttgttacatgagtgcaaggttattgtttttttttgtgtgtgtgttttattttga 273

                                                              
Query: 72  tcatccatttgatcatggatgagctaatgaatgcctatataataagtcaag 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcatccatttgatcatggatgagctaatgaatgcctatataataagtcaag 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 524
Length adjustment: 8
Effective length of query: 114
Effective length of database: 516
Effective search space:    58824
Effective search space used:    58824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)