BAC Information

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BAC

Clone NameMSMg01-199E15
Chromosome10 (Build37)
Map Location 66,437,765 - 66,437,912
singlet/doubletsinglet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199E15.T7 (MSMg01no199_e15.b1)MSMg01-199E15.TJ (MSMg01no199_e15.g1)
ACCAG386281
length715803
length of high quality
(start - end)
---148 (152 - 299)
definitionCHROMAT_FILE: MSMg01no199_e15.b1 PHD_FILE: MSMg01no199_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:48 2005CHROMAT_FILE: MSMg01no199_e15.g1 PHD_FILE: MSMg01no199_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXX
NCCTCGATGCAGTGGGAGGCCTGGAGGACGCCTTTTTCTCACGGGGAGGT
GAACTATAGAAGTATCAACAAAATTCTGTCTCAAATGCGAGGGGGTATAT
CCAAGGAGGAGAGGAAGAGGTGCCTCAGTGGTTTTGGTCAGTGGTTATGG
AATAGACAGAGCTTGCTGTTCATGACTAAAAGCTCAGATCTTACTACCCA
TATCGAACAATTCACTATTACCTGTCACTCTATCCCGAAGAGATCAGATG
TCCTCTTCTGACATCTTTGGGTACTACATACGTATGGCGAGAATTCTGGA
ATTTGGGTCACCTCAATAATTTTTTTTCTTGGTCGGTGGCGTTGCACGCC
TTTAATCCTTTTTTTCGCCTCCCTCCAGGTCGTTCGCATCTCTGACTTCC
ATTTTTTTTCCGTTTTTTCCCCCCCCCCCACAATTTATATTCTGTGTTGA
CCGAACAAATTCCTTGTTTTGTATATCACACCCCTTTTTTTTTTTATTCC
CTTTTTTTTTCCCGCTTCATTCCCTTCCTTCAATCCATTTTGCTTCTTTA
TCTTGTCGCTCCATTTTATTGCCCCTTTCTTTCTTTCTTCACCTTTCCTT
TATCCCCTATCCCCCTCTTTCTTTTCGTTTTCATTCCTATCCTCTTCTCC
TTTTCCCTTCTTTCCCCCCCTTTTCTTTATTCCCTCCCCTTTTTTATTTC
TTCTCTTCTTTCATTCCATCTCTTTCGTCTCTTTTTTACTCCGCCTTTTC
TCACTCCCCTTTATAACATTCTTTTTCTCTCCCCGTCTTTCTTTTTTTCA
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_e15.g1 MSMg01no199_e15.g1 CHROMAT_FILE:
MSMg01no199_e15.g1 PHD_FILE: MSMg01no199_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:48 2005
         (148 letters)



>mm_chr10_66437565_66438112
          Length = 548

 Score =  232 bits (120), Expect = 7e-66
 Identities = 141/148 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagacagagcttgctgttcatgactaaaagctcagatcttactacccatatcgaacaat 60
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 348 atagacagagcttgctgttcatgactaaaagttcagatcttagtacccatatcgaacaat 289

                                                                       
Query: 61  tcactattacctgtcactctatcccgaagagatcagatgtcctcttctgacatctttggg 120
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcacaaatacctgtcactctatcccgaagagatcagatgtcctcttctgacatctttggg 229

                                       
Query: 121 tactacatacgtatggcgagaattctgg 148
            || |||||||||||| |||||||||||
Sbjct: 228 caccacatacgtatggtgagaattctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)