BAC Information

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BAC

Clone NameMSMg01-201M19
Chromosome10 (Build37)
Map Location 48,870,346 - 48,871,000
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201M19.T7 (MSMg01no201_m19.b1)MSMg01-201M19.TJ (MSMg01no201_m19.g1)
ACCAG387203AG387204
length1,2031,231
length of high quality
(start - end)		425 (31 - 455)665 (78 - 742)
definitionCHROMAT_FILE: MSMg01no201_m19.b1 PHD_FILE: MSMg01no201_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:17 2005CHROMAT_FILE: MSMg01no201_m19.g1 PHD_FILE: MSMg01no201_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGAACATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTCACTGAGGAATATGAATGGCTGAGAAGCACTTGAAGAAATGTTCAATA
TCCTTAATCATCATCATCGGGGAAATGCCCATCAAAACAACCCTGAGATC
AACCCTGACACCAGTCAGCATGGCTAAGATCAAAATTTCAGGTGACAGCA
GATGCTGGTGAGGTTTTGGAGAAAGAGGAACCCTCCTCCATTGCTGGTGG
GATTGCAAGCATGTACAACCACTCTGGAATCAGTCTGGCAGTTCCTCATC
AAATTCAACATAGCACTACTGGAAGATCCAGCAATACGTCTCCTGGGTAT
ATACCCAGGAGATGTTCCAACTTGTAATAAGGACACATGCTCCACTATGT
TCATAGCACCCTTATTTATAATTAGCCAGAAGCTAGAAAGAACCCAGATG
TCCCTCAACAGAGGAATGGATAAAGAAAATATGGTACATTTACACAGTGG
AGTACTAAGCAGCTACTTAAAGCAATGAATTCATGAAATTCCTAGAGAAA
GGGATGGATGTGTAGGACATCATCCTGAGTGAGGTAACCCAATCACAAAA
GAACACACATGATATGCACTCATTGATAAGTGGATATTAGTCGCGAAGCT
CAGAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAGG
AAGACCAAAGTGTGGATATTTCATTCCTCCTTAGAATGAAGAACAAAATA
CCCATGGAGGGAGTTACAAAGTTTTGAGGTGAGTCAGAAGGAAGGACCAT
CCAGAGATTGCCCCACCCGGGGATCCATCTCATATACAGCCACCAAATGC
AGACACTATTGCATATGCCAGCCAGATTTTGCTGACAGGATTTTGATAAT
AGCTGTCTTCTGTGAGGCTTTGCCAGTGCCAGGCATATTCCTAAGTGGAT
GCTCTCAGTCCTCTTATTTAAGGTAACACCGTCCTTTCCTTTGTAAAACC
TTAACTAATTTCCGTCAGCTTAAAAATCCTCCTCCCCCATTTGAGCTTAC
TCTTTTTTTTCTTATTTCTCTACTCCCTTAATCCTTTTCTTTCCTTTTTT
TATTATTCTTAAAATGTTTCTAGCTTCTTAATTCCTTTTCCTCTTTTAAA
ATCTTCTTCTCCCCTTCCTCCGATAATAATCCTTCTCTCCCGTTCTCTCC
TCT

NCAATTTTTNNNNNTAAGAAGGNAGNCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAATGTCTTAGTGCATGAA
TTATGTACTTAAAAATAAAGATCATTATCTCATATGCCCCGCGCTCTCTT
GGGGTTATAATTTAGAATCTTGCAGGAACATGAAAACATGTACTATCTGC
CAATTATTTGCTGTGCAAGATTAGCAAAAGAACCTGGAGTGGCATTTTTG
CTGTGGAGAGTAGCTTTGTAGCTTCCCTGGACTGGAATGCCTTCTGTTCC
AAGTGAGGAGTCTCAGAGGGCCAAATGTATTGCCTTCTGTAGTTCTCTTG
CTTGCACATTCTTACCTTGTTTATCCTAGTATGTGTTGGGCACCCACATG
ATAGAATGTATCATGCCAGTTACTGCATGTTACGGGTTAAATAAAAAACA
AAACCAAAAAAAATAAAAAAAATAAAAACAAAGCAAAGCACCTGTCCTGG
AATGGCTTAAAAGACTGTATGACAATGTATGACAAGTAGACTAAGAATCT
TAACAAGATCTTGTGACTTCAGGACAAATGATAAATGATATGTAACCTAA
CCAGAAAATGTTTGGTGTGATAATGACAGAAAAAAGAAATTACTCCCTCT
ATAATCAGTCACAGCATGTCCAAATGTCTTACTTCTCTCTGCAACCAGGT
ACTAACTCACAACAAGGAACTAGAATGAATGAATGTATGAATGCATGAGT
GAACAAATAAATAGAGAAAGGAAAGAAGAAATAAAAACAAACAAAAACAT
TTTGCATATTTGAAAGTCTCAAAAAAGATGATGTACCCATCTACCTTCAC
TTTGTCTAAAGTTTCTGATCTTCCTTGATTTCATGCCAATCTTATCATAA
CATGTCCAAGGATGCCATTTTAAACCCTTAATATCCTCATATTTTATATC
TATATTTTCCTTTCTCCTTGGGCCATGAATTTATTAATTGTTTATATACC
TGGATCTCCTGTTGTTGCTATCTCCATAACTAAATATTTTTTTCTTTAAC
TCTCAGTGCGAATATATATCTCTCCCACTTCTTTTCAACTTTATATTTTT
TCTCTCTCCCTCNTTTTTATTCTCTTCTCTATATATTTCCCCCNTTTTCT
TTCTTTTTTTTGTACTCCTCCTTCCCTCTTTTATTCTATTTTCTACAACT
TTCTCTTCTTTCTTTTGTTCTTGTTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_m19.g1 MSMg01no201_m19.g1 CHROMAT_FILE:
MSMg01no201_m19.g1 PHD_FILE: MSMg01no201_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:17 2005
         (665 letters)



>mm_chr10_48870142_48871206
          Length = 1065

 Score = 1193 bits (617), Expect = 0.0
 Identities = 648/661 (98%), Gaps = 6/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaatgtcttagtgcatgaattatgtacttaaaaataaagatcattatctcatatgccccg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 205 aaatgtcttagtgcatgaattatgtacttaaaaataaagatcattatctcatatgcacag 264

                                                                       
Query: 65  cgctctcttggggttataatttagaatcttgcaggaacatgaaaacatgtactatctgcc 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctctcttggggttataatttagaatcttgcaggaacatgaaaacatgtactatctgcc 324

                                                                       
Query: 125 aattatttgctgtgcaagattagcaaaagaacctggagtggcatttttgctgtggagagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattatttgctgtgcaagattagcaaaagaacctggagtggcatttttgctgtggagagt 384

                                                                       
Query: 185 agctttgtagcttccctggactggaatgccttctgttccaagtgaggagtctcagagggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctttgtagcttccctggactggaatgccttctgttccaagtgaggagtctcagagggc 444

                                                                       
Query: 245 caaatgtattgccttctgtagttctcttgcttgcacattcttaccttgtttatcctagta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaatgtattgccttctgtagttctcttgcttgcacattcttaccttgtttatcctagta 504

                                                                       
Query: 305 tgtgttgggcacccacatgatagaatgtatcatgccagttactgcatgttacgggttaaa 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgttgggcacccacatgatagaatggatcatgccagttactgcatgttacgggttaaa 564

                                                                       
Query: 365 taaaaaacaaaaccaaaaaaaataaaaaaaataaaaacaaagcaaagcacctgtcctgga 424
           |||||||||||||||||||   ||||||   ||||||||||||| || ||||||||||||
Sbjct: 565 taaaaaacaaaaccaaaaa---taaaaa---taaaaacaaagcataggacctgtcctgga 618

                                                                       
Query: 425 atggcttaaaagactgtatgacaatgtatgacaagtagactaagaatcttaacaagatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atggcttaaaagactgtatgacaatgtatgacaagtagactaagaatcttaacaagatct 678

                                                                       
Query: 485 tgtgacttcaggacaaatgataaatgatatgtaacctaaccagaaaatgtttggtgtgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtgacttcaggacaaatgataaatgatatgtaacctaaccagaaaatgtttggtgtgat 738

                                                                       
Query: 545 aatgacagaaaaaagaaattactccctctataatcagtcacagcatgtccaaatgtctta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatgacagaaaaaagaaattactccctctataatcagtcacagcatgtccaaatgtctta 798

                                                                       
Query: 605 cttctctctgcaaccaggtactaactcacaacaaggaactagaatgaatgaatgtatgaa 664
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 799 cttctctctgcaaccaggtactaacttacaacaaggaactagaatgaatgaatgtatgaa 858

            
Query: 665 t 665
           |
Sbjct: 859 t 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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