BAC Information

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BAC

Clone NameMSMg01-202D18
Chromosome10 (Build37)
Map Location 29,713,551 - 29,713,911
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389
Downstream geneGm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202D18.T7 (MSMg01no202_d18.b1)MSMg01-202D18.TJ (MSMg01no202_d18.g1)
ACCAG387471AG387472
length740746
length of high quality
(start - end)
593 (126 - 718)363 (381 - 743)
definitionCHROMAT_FILE: MSMg01no202_d18.b1 PHD_FILE: MSMg01no202_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:58 2005CHROMAT_FILE: MSMg01no202_d18.g1 PHD_FILE: MSMg01no202_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTTCCAATTTTGAATGGCCATGAAGCACCTAAAGATATTT
TCAACATCCTTAGCCTTTTCGCCAATACAGATCAAAACAACCTGGAGATT
CCACCTCACACCAGTCAGAATGGCTAATATCAAAAATTCAGGTGACAGTA
GATGCTGGTGAGGTTGTGGATAAAGAGGAACAAGCCCCATTGTTGGTGGG
ATTGCAAGCTTGTACAATCACTCCGGAAATCAGTCTGGTGGTTCCTCAGA
AAATTGGAAGTAGTACTACCTCAAGACCCAGCTATACCCCTTCTGGGCAT
ACACCCAATTTATGCTCTAACATATCAGATGAATACATGCTTCACTATGT
TCATAGCAGCCTTATTTATAAAAGACAGAAGCTGGAAACAATACAGATGT
CCCTCAACTGAGGAATGTATACAGAAAGGTAGAAAATTTGCACAATGGAG
TATTACTCAGCTATTAAAAACAATGGCTTCATGAAATTTGCCAGCAAATG
GATGCAACTAGAAAATATCATCCCCTGTGAAGTAACCCCAGGTCCAAAAG
AACACATATGATATGTATTCACTGATAAATGGATATTAGCCCAAAAGCTC
AGGAGACCCATGAAACAACTCACAGACAGACCATATGATACTTAAGAAGA
AGGAAGACTAAATTGTCGATGTAGAAGAGGGAACAAAATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGAGTCACTAATATAAAATTA
TGAAATGGATAGAATTGGAAAACCCCAAAACCTGGAAAACAAAATAATCT
GGAGTCATAAATGATATTTTTTTCTCATTTGTGGATTCTATACCCTAAAT
GTCAAATATGTATAAAAGTGGGAATAATTATAAGTAATGACCAGGATCTA
AAAGGGGGATACATGAATGGAAAAAGGAAGATTTTAAAAAAGAAAATTTT
GAAGAGAATAAAACAAAGTAGAAGGAAGAATTCCAGGGGTGAGAGGTATA
ACAGGGAAAGTATGAATGGAAAGGCAAGAGGAAAGGGGACAGTGATAAGG
AAGAGTTGGACAAAATGAAATAAATATAAAAAATCTTATGTGGAAATCTA
TCTATTTACAAGGCAATTTTAAAAGTAAGGCAACATCTGAAAAAAGAACA
TGAGATCACCATAATATATTCTATATCATATAACTGAATATTATACAGTT
ATACATAATATTGTGCAAATATAGAAAATAATGAAAAATGATTAGGATTG
CCTATTAGAGAAAACTCATTCTAAATGGAGGAGAGGAGAGAAGAGTGGCC
AAAACAAGAGATTTATGGGAAAAAAAAGTTGGAAATCTACAGATTTGTAA
GCTCATCAAATAAAATAACTAAAATTAGAAGCATGTAACAGTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_d18.g1 MSMg01no202_d18.g1 CHROMAT_FILE:
MSMg01no202_d18.g1 PHD_FILE: MSMg01no202_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:58 2005
         (363 letters)



>mm_chr10_29713351_29714111
          Length = 761

 Score =  659 bits (341), Expect = 0.0
 Identities = 357/363 (98%), Gaps = 2/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaggggacagtgataaggaagagttggacaaaatgaaataaatataaaaaatcttatg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gaaaggggacagtgataaggaagagttgggcaaaatgaaataaatataaaaaatcttatg 260

                                                                       
Query: 61  tggaaatctatctatttacaaggcaattttaaaagtaaggcaacatctgaaaaaagaaca 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaatctatctacttacaaggcaattttaaaagtaaggcaacatctgaaaaaagaaca 320

                                                                       
Query: 121 tgagatcaccataatatattctatatcatataactgaatattatacagttatacataata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagatcaccataatatattctatatcatataactgaatattatacagttatacataata 380

                                                                       
Query: 181 ttgtgcaaatatagaaaataatgaaaaatgattaggattgcctattagagaaaactcatt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ttgtgcaaatatagaaaataatgaaaaatgattaagattgcctattagagaaaactcatt 440

                                                                       
Query: 241 ctaaatggaggagaggagagaagagtggccaaaacaagagatttatgggaaaaaaaagtt 300
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||
Sbjct: 441 ctaaatggaggagaggaaagaagagtggccaaaacaagagatttatgggaaaaaa--gtt 498

                                                                       
Query: 301 ggaaatctacagatttgtaagctcatcaaataaaataactaaaattagaagcatgtaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggaaatctacagatttgtaagctcatcaaataaaataactaaaattagaagcatgtaaca 558

              
Query: 361 gtt 363
           |||
Sbjct: 559 gtt 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 761
Length adjustment: 9
Effective length of query: 354
Effective length of database: 752
Effective search space:   266208
Effective search space used:   266208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)