Query= MSMg01no205_d23.b1 MSMg01no205_d23.b1 CHROMAT_FILE:
MSMg01no205_d23.b1 PHD_FILE: MSMg01no205_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:05 2005
(710 letters)
>mm_chr10_42030974_42032082
Length = 1109
Score = 990 bits (512), Expect = 0.0
Identities = 633/712 (88%), Gaps = 64/712 (8%)
Strand = Plus / Plus
Query: 6 ggaattcagtgtctcatttcaggaaaagtatcttccaggtagtgatatcgttcagtggtg 65
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 255 ggaattcagtgtctcacttcaggaaaagtatcttccaggtagtgatatagttcagtggtg 314
Query: 66 cagcacttgcctagcatacgggaagaccccgagtttggtagccagcatcacaaaaatcca 125
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagcacttgcctagcataggggaagaccccgagtttggtagccagcatcacaaaaatcca 374
Query: 126 tctgcccacccacctacccatccatccatccatccatccatccatccatccacccatcca 185
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctgcccacccacctacccatccatccatccatccatccatcca---------------- 418
Query: 186 ttcacccatccatccatctatccacccatccttccatctcctatacatccatcatccagc 245
||||||||||||||||||||||||||||
Sbjct: 419 --------------------------------tccatctcctatacatccatcatccagc 446
Query: 246 tgccatttatccacccattcacctgcccatccatccaccc----atccatctttccatct 301
|||||||| ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 447 tgccatttgtccacccattcacctgcccatccatccacccttctatcca----tccatct 502
Query: 302 gtcacccacccatccatctatccacccactgacccatccatccattgccatccatccatc 361
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 503 gccacccacccatccatctatccacccaccgacccatccatccattgccacccatccatc 562
Query: 362 cacccttccatttacccacccatccatctgccaaccatct---atccatccatccatcca 418
|||||||||||||||||| |||||||| || |||||| | ||||||| |||||||
Sbjct: 563 cacccttccatttacccatccatccat----catccatctgccaaccatccacccatcca 618
Query: 419 tccatccatccatccatccatccatccatctgtatgatcatacatacagtcataccacat 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 accatccatccatccatccatccatccatctgtatgatcatacatacagtcataccacat 678
Query: 479 ttaacgttcagaagccctaattcagacttttccaatgcttggcttctctgatcatctctc 538
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 679 ttaacgttcagaagccctaattcagacttttccaatgcttggcttctctggttatctctc 738
Query: 539 tgcttgacataaaagagttaatatctaaaatagaatgtggacagatcattaaatgacaaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgcttgacataaaagagttaatatctaaaatagaatgtggacagatcattaaatgacaaa 798
Query: 599 tagcctcatggaatgtatttatattgatatgaggcacatgactgactactctcccaaaca 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 799 tagcctcatggaatgtatttatattgatacgaggcacatgactgactactctcccaaaca 858
Query: 659 gttgattttcacatggggggggggggtcatagtttttcttttctgaaaagga 710
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 859 gttgattttcacatggggggggggg-tcatagtttttcttttctgaaaagga 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 710
Length of database: 1109
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1099
Effective search space: 769300
Effective search space used: 769300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no205_d23.g1 MSMg01no205_d23.g1 CHROMAT_FILE:
MSMg01no205_d23.g1 PHD_FILE: MSMg01no205_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:05 2005
(245 letters)
>mm_chr10_42110210_42110854
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 241/245 (98%)
Strand = Plus / Minus
Query: 1 catgatcatggaaatgtggatctagtgggccctcatgctgtattcactcctgctggggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgatcatggaaatgtggatctagtgggccctcatgctgtattcactcctgctggggag 386
Query: 61 ggggcacacagagaaacgtgaaggaatgcacgccccagggacctctcctgataacagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggcacacagagaaacgtgaaggaatgcacgccccagggacctctcctgataacagtat 326
Query: 121 ctatcagtccatctctaaggtcagcatcctcaggccacagccacgtcctaaagtcccacc 180
|||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct: 325 ctatcagtccatctctaaggtcggcatcctcaggccacagccgcctcctaaagtcccacc 266
Query: 181 ctgaattcagctctgttgtgctgaggatacgtttctaccacatgcctctctgaggacgca 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgaattcagcactgttgtgctgaggatacgtttctaccacatgcctctctgaggacgca 206
Query: 241 tcaga 245
|||||
Sbjct: 205 tcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
