BAC Information

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BAC

Clone NameMSMg01-206M10
Chromosome10 (Build37)
Map Location 103,706,764 - 103,707,288
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206M10.T7 (MSMg01no206_m10.b1)MSMg01-206M10.TJ (MSMg01no206_m10.g1)
ACCAG390262AG390263
length726725
length of high quality
(start - end)
349 (69 - 417)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no206_m10.b1 PHD_FILE: MSMg01no206_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:03 2005CHROMAT_FILE: MSMg01no206_m10.g1 PHD_FILE: MSMg01no206_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACAGAGCACTCTTGAGTGTCCAAGAAGCTCTTAAAGAAATT
CACAGACCACATGAAGCTCTAGACCAAGAAAGATCAACATGTGGATGCTT
CAGTCCTTCTTAGAGGGGGAAAAATACAAGAACAAATACAGAAACAAATT
GTGGAATACAGACTGAACGAAAGGCCATCGAGAGACTGCCCTACCTAAGG
ATCCTTCACTATATATAGTCACCCAAACACTATGGCATATGCCAAGAAGT
GCTTGCTGACAGAAGCCTGATATAGCTGTCTCCTGGGAGGCTTTGCCAGA
GCCTGACATATACAGAGGTGGATCCTCTCAGCCAACTAGTAAACCGATCA
CAGGGTCCCCAATGAACGACCCAGAGAAAGCTGAAGGGGTTTGCAACTCC
ATAGGAAGAACAACAGTATCAACCAACTAGAGCTCCCAGGGTTGAAACCA
CCAAACAAAGGGTACACATGGAGGGACCCATGGCACCAGCCGCATATATA
GCAGAGGATGGCCTTGTCACATGTCAATGGGAGAAGTAGCCCTTGGTCTT
GTGAAGGCTCAATTCCCCATCATAGGGGAATTTGATGTCGGTGAGGCAGG
AGTGGGTGGCTGCATGTTGAAATATCTTCTTATGTTCCTTGTTAGGGCAG
TCCGGCTTCTCTCTTTGCCCCCTTTT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGCTCAACTCCATCTTGATTC
ATTTAATGCATTCTAAGTTAGCCCCAGATACACAGATAGACTCTGTTTCA
GAAAGAGAAGAACAGAGGGTGTAGATACATTATGTACTGTGCATTCATCG
AGATATTTGTCACGGAAAATTACTATGGCTGATGAATGGTAAAGTTGCTG
CCAGACTCTAGTTCATATTCAGAAAATCATTGTATGCTATTGATTCACTT
AAATCTTGAAAATCAAATCAAATTGTTTATTGTCATATACAGAATAATTA
CTTCATGATTTATAGTTATGGAAAGCAATCATATGCTTAATAAATATAAT
TTGCTAACTATTTTACCGCACATATTAGTTATAAAATATATTCTAAATTT
TCTGATCTGACTACATAAAATTGCATACTTGTTCTGCAATTACTTTGAAT
GTAAATAAAAACTTAAAAATAAGTATTTTACAACAATAAATCATTGCAAG
TTTTCATTAACAAATCTGTTTGCAATGCTTTACTATTTAAGGAAAGATGA
TGAACAGAAATAGAGAAATGAAATTTATTTTCCATACTGAAGAAAACCAG
ATGTCTATTTGCTGAAATTTTTGTCCAAATCAAATTCTGTGCTCACTATT
CCACAAAATGTGAATAGGCAATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_m10.g1 MSMg01no206_m10.g1 CHROMAT_FILE:
MSMg01no206_m10.g1 PHD_FILE: MSMg01no206_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:03 2005
         (525 letters)



>mm_chr10_103706564_103707488
          Length = 925

 Score =  930 bits (481), Expect = 0.0
 Identities = 514/525 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagctcaactccatcttgattcatttaatgcattctaagttagccccagatacacag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 201 agtgagctcaactccatcttgattcatttaatgcattccaagttagccagagatacacag 260

                                                                       
Query: 61  atagactctgtttcagaaagagaagaacagagggtgtagatacattatgtactgtgcatt 120
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 261 atagactctgtttcagaaagagaagaatagagggtgtagatccattatgtactgtgcatt 320

                                                                       
Query: 121 catcgagatatttgtcacggaaaattactatggctgatgaatggtaaagttgctgccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 catcgagatatttgtcacggaaaattactatggctgatgaatggtaaagctgctgccaga 380

                                                                       
Query: 181 ctctagttcatattcagaaaatcattgtatgctattgattcacttaaatcttgaaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctagttcatattcagaaaatcattgtatgctattgattcacttaaatcttgaaaatca 440

                                                                       
Query: 241 aatcaaattgtttattgtcatatacagaataattacttcatgatttatagttatggaaag 300
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aatcaaattgtttattgtaatatacagaataattacttcatgatttacagttatggaaag 500

                                                                       
Query: 301 caatcatatgcttaataaatataatttgctaactattttaccgcacatattagttataaa 360
           ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 501 caatcatatgcttaataaatataatttgctaactattttacaggatatattagttataaa 560

                                                                       
Query: 361 atatattctaaattttctgatctgactacataaaattgcatacttgttctgcaattactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatattctaaattttctgatctgactacataaaattgcatacttgttctgcaattactt 620

                                                                       
Query: 421 tgaatgtaaataaaaacttaaaaataagtattttacaacaataaatcattgcaagttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaatgtaaataaaaacttaaaaataagtattttacaacaataaatcattgcaagttttc 680

                                                        
Query: 481 attaacaaatctgtttgcaatgctttactatttaaggaaagatga 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaacaaatctgtttgcaatgctttactatttaaggaaagatga 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)