BAC Information

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BAC

Clone NameMSMg01-207A14
Chromosome10 (Build37)
Map Location 123,757,341 - 123,873,764
singlet/doubletdoublet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207A14.T7 (MSMg01no207_a14.b1)MSMg01-207A14.TJ (MSMg01no207_a14.g1)
ACCAG390421AG390422
length1,2611,231
length of high quality
(start - end)
416 (44 - 459)387 (72 - 458)
definitionCHROMAT_FILE: MSMg01no207_a14.b1 PHD_FILE: MSMg01no207_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:26 2005CHROMAT_FILE: MSMg01no207_a14.g1 PHD_FILE: MSMg01no207_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,757,341 - 123,757,751)(123,873,381 - 123,873,764)
sequence
NNNGGGGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGCCTTAAGTGGCTCACCAGGTTGTTTTGAATAATAATGATGCTGA
TGACAAAAAACCACAGCTAACATTTCTCACTCAAGTCCTGAGCAGGGCTG
ACCTCCCACTGAGAGTTTGCAAAGAAGGTCTCTGCCCTTCCCCTGTACTT
TGCACAAATTATAGCATTTCAAGCTTCTAAAGCTCCTAATGGGACCATTT
AACAGGCAAAGGAACTGGGGTACTAAAAGGTTAAATAACATAGACAAGAT
GACCAGGCATGTACTGAGACCAGATCTGCCTGACGCCGTACCCTGATTCG
TACACAGTGCATTAGAATGCCAAAATATTGTGCTTCTCTGGACACGATGA
TTTATATGGAGAAGAAGGAAAATTATTTGAATTTGTAGCTACTAGAAATT
TTAAGGATTTTTTTCCGCCCCCTGAATAGCCTAGTGATAAATATAAAAAA
AGAGGATTTTTAAAAGACCAAATGACAGCAACCCATGTTTTTGAAGATGT
TAATGCCTTTTATGTGTGACTCTAGAATCAGGCAGAAGTCCAGAGTGAAG
ATGTCTCAGCTTGTTCTCCCTTCACTGGACAGGATACACTGTGGCCAGAG
AAAAGAAAGAAGCCGAAGGAGCTGGATGCTGGAAGCAGGCAGGACTCCGT
ACATCATTTCCTCTGTGCAGCTGTGTTTATGAGCACAGTTTGAACTTGGC
TGCTGTAATCAGCTGAGTTTTTACTGGTTGTTTAAGAGATGTTTCCAGTC
TGTTTACTTCCAAAGTTGGGTTACAATTTATGGAGAAATCTTTAAGCAAA
ACTAAAATCCACACAGAGGCATAGGCCAAGTGAAGGATGAAGAATGAGAG
AAATTAAATAAATAAAGATATACAAAGGAGTTCATTATTTTGCTTCTTTT
ACAAATGAAGCTGTACTTTTTATACATACAAAAAAATTGGTTTTTTGTGT
TTGTTTTTTGGGGTTGTTTGCTTGGTTTGTTGATACCTAAAAACTTTCCA
CTATAATAATATTTCTTTTTTTAATAATTAATTTTATATATCTCCTTGTT
TCTTTGATTTTTTTTATTTAATATTTTTTATCCTCATCTCTTACATTCCA
TTCTTTCTATTTTCCATAACCATCTTCTTCTTTCTTCTTTTTTAATACAG
CTTTTCTTTGCTGTTTTTTTATTTCTTTCTATTTCTGCTTTATTTCTTAT
CTCATTTTCTT
TTTTTGCAGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGCTGTTCCATCTAAATTATGTAAGGC
CTGATTGAAACATCTGTGTAGAATGCACAACTTCCCAAGTCCTCATGGAA
ATGCAGTCAGGCAGTGAGGCAGCCAAGGAAACTACCAGGAGGCCACAGTA
GCACTCTTCCTGGGCTGCTCTGCCTTGATGATAAATATTGCTATGAGGAT
CTATCTGTAGGGGTGAGTTTGGGCTACACCACTTTGTGACTCTAACAGGT
CTCACACTTCAAACCAATTGCCCAGCAGCTCCCTGGATTCACGAAAATGC
TTTGGCTATTTCAAAGACTGGACACTCCTAAACCTTGCTCTGCTATCCCA
GGCCTAAGCAGAATAGTGGCCAAATTCTCACATGGCTGGCTGGCTTTTAT
CTCCTGTTTTATCTCACCTCCATTTGTTTCCCATCAATTCATGACAAACC
TTTTTTTCCACCCTGCATCCTTGCCCATGCCACTGTCCAGCCCTGTCTCC
CTTTGCCCAGACATTAGCCTTTGGCATCTTTATTGATCAATTTATCAAAA
ACAAATTGGGGACAAAGACCCTTAGAGTTTGGACACACAGATTGCTGATT
GAATCAAAGCTCAGTGCTTGTCTACAGTTCTATGAGGACTTGGGTAGTGG
GGGCTGGAGAGAAGTTAGTGTATCCTACAGGTATTGCAATCAATCTACAT
CTCCAACAGGATCAGCCAGTATGAGAGCAGGGAGGCTTGAAGGAAGTCGG
AACTCATTCTTAATCAGGTAAAGTTGGGAATGGAGTTACGAAGCACTTAT
AGCATAGGGAATGCTTTCTGCTCTGCTGATCATGAATATTGATACTATTA
TTCAGATTACCAGCAGGATTTGAAGGCCCTGTGATTTATATTGAAGAAGG
CCCTCCTCCTCCTCCTTCTTTTTCTTTCGCTTTTGCTCTGATTTCTTGGT
TTTTCCCTTTCTTCCTCTCCTTTNCCTTTTTCTTTTCCTTTTTCCTTTTC
CTTTTTCATCATCTGCTTCCACATTTTTCTATTAGAAACTTCTATATCTC
TTATCTTCACCTTCCTTTTTATTTTCTTATTATTATCTCCCCTTCTTTTT
TTTTTTATCTTCCTTATCATTAATCCTATTTGCTTTTATAGTTTCTCTAT
TAAATTTTATATTTTTATTGTGATATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_a14.b1 MSMg01no207_a14.b1 CHROMAT_FILE:
MSMg01no207_a14.b1 PHD_FILE: MSMg01no207_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:26 2005
         (416 letters)



>mm_chr10_123757138_123757953
          Length = 816

 Score =  725 bits (375), Expect = 0.0
 Identities = 402/411 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggccttaagtggctcaccaggttgttttgaataataatgatgctgatgacaa 63
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggccttaagtggctcaacagggtgttttgaataataatgatgctgatgacaa 263

                                                                       
Query: 64  aaaaccacagctaacatttctcactcaagtcctgagcagggctgacctcccactgagagt 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaaccagagctaacatttctcactcaagtcctgagcagggctgacctcccactgagagt 323

                                                                       
Query: 124 ttgcaaagaaggtctctgcccttcccctgtactttgcacaaattatagcatttcaagctt 183
           ||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ttgcaaagaaggtctctggtattcccctgtactttgcacaaattatagcatttcaaactt 383

                                                                       
Query: 184 ctaaagctcctaatgggaccatttaacaggcaaaggaactggggtactaaaaggttaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ctaaagctcctaatgggaccatttaacaggcaaaggaactggggtactaaaagattaaat 443

                                                                       
Query: 244 aacatagacaagatgaccaggcatgtactgagaccagatctgcctgacgccgtaccctga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacatagacaagatgaccaggcatgtactgagaccagatctgcctgacgccgtaccctga 503

                                                                       
Query: 304 ttcgtacacagtgcattagaatgccaaaatattgtgcttctctggacacgatgatttata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcgtacacagtgcattagaatgccaaaatattgtgcttctctggacacgatgatttata 563

                                                              
Query: 364 tggagaagaaggaaaattatttgaatttgtagctactagaaattttaagga 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggagaagaaggaaaattatttgaatttgtagctactagaaattttaagga 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no207_a14.g1 MSMg01no207_a14.g1 CHROMAT_FILE:
MSMg01no207_a14.g1 PHD_FILE: MSMg01no207_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:27 2005
         (387 letters)



>mm_chr10_123873381_123874167
          Length = 787

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctgttccatctaaattatgtaaggcctgattgaaacatctgtgtagaatgcacaac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 aaagctgttccatctaaattatgtaaggcctgattgaaatatctgtgtagaatgcacaac 325

                                                                       
Query: 61  ttcccaagtcctcatggaaatgcagtcaggcagtgaggcagccaaggaaactaccaggag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 324 ttcccaagtcctcatggaaatgcagtcaggcagtgaggcagccaaggaaactaagaggag 265

                                                                       
Query: 121 gccacagtagcactcttcctgggctgctctgccttgatgataaatattgctatgaggatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gccacagtagcactcttcctgggctgctctgccttgatgataaatattgctatgaggatc 205

                                                                       
Query: 181 tatctgtaggggtgagtttgggctacaccactttgtgactctaacaggtctcacacttca 240
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 204 tatctgtaggggtgagtttgggctacaccactttgtgcccctaacaggtctcacacttca 145

                                                                       
Query: 241 aaccaattgcccagcagctccctggattcacgaaaatgctttggctatttcaaagactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aaccaattgcccagcagctccctggattcacgaaaatgctttggctatttcaaagactgg 85

                                                                       
Query: 301 acactcctaaaccttgctctgctatcccaggcctaagcagaatagtggccaaattctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  acactcctaaaccttgctctgctatcccaggcctaagcagaatagtggccaaattctcac 25

                                   
Query: 361 atggctggctggcttttatctcct 384
           ||||||||||||||||||||||||
Sbjct: 24  atggctggctggcttttatctcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)