BAC Information

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BAC

Clone NameMSMg01-207C12
Chromosome10 (Build37)
Map Location 17,055,715 - 17,056,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207C12.T7 (MSMg01no207_c12.b1)MSMg01-207C12.TJ (MSMg01no207_c12.g1)
ACCAG390491AG390492
length1,2641,242
length of high quality
(start - end)
416 (45 - 460)296 (471 - 766)
definitionCHROMAT_FILE: MSMg01no207_c12.b1 PHD_FILE: MSMg01no207_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:43 2005CHROMAT_FILE: MSMg01no207_c12.g1 PHD_FILE: MSMg01no207_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCGACACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGCATTCAAAGAGCTGATCTCCAGAAATTCAAATAACCCCATTA
AAAATGGGGTACAGAGCTAAACAAAGAACTCCCCACTGAGGAATACTGAA
GGGCTGAGAAGCACTTGAAAAAATGTCCAGCACCCTTACTCACCAGGGAA
ATGTAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAAGTCAGGTGAGAGCAGATGCTGGCAAGCATGTGAAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATTAGTCTGGCGGTCCTCAGAAAACTGGACATAGTACTACCAGTA
GATCCAGCATTACCTCTTCTGGGCAGATATCCAGAAGATGTTCCAACTGG
TAATAAGGACTTTGTTCCACCCCGCCATAGCAGCCCTATTTATAATAAAA
AGAAGCTGGAAAGAACCCAGATGTCCCTTAACAGAGGAATGGATACAGAA
AATGTGGTACGTTTACACAATGGACTACTACTCAGCTATTAAAAACAATG
AATTTATGAAATTCTTGGGCAAATTGATGTATCTGGAGGATATCATCGTG
AGTAAGGTAACCCAATCACAAAAGAAGTCACTTGATATGCACTCACTGAT
AAGTGGATATCAGCCCAGAAACCTAGAATATCCAATATACAACTTCCAAA
ACACAAGAAAATCAAGAAGGAAGACCAATGTATGGATACTTTCATTCCTC
CCTTGAATAGGGAATAAATTATCCATGTAAGGAGTTGCAGAGACAAAGTT
TGGAGCTAAGACAAAAGGATGGACCATCCAGAGACTGCCCCTCCTGAGGT
CCATCCCATAATCAGCCACTAAACGCAGACACTATTGCATATGCCAGCAA
GAATTTGCTGAAAGGACCCTGATATAACTGCCTCCTGTGAAGGCTTTTGC
CAGGGCTTGCAAATACAGAAATGGTAGCCTCCAGTCCTCTTTAAGAAGGA
AATTTCGGGTCCCCCTGGTTTAAAATTTTAATAAATTTCCCCATAAATTA
TGGGTTTTGCTACCCCTTTTGGGGGTAAAACAATTTTTAACAGTTTTATT
CCCCCAAATTCCTGTTTCTTTTTGTTTTTATTTATATAAAATGCTCATAT
TGTCTGCTCTGTTAATAAAAATTCTCTCTTTTTTAAAATCCAACTCTTTT
TTATTTTGTCTTTT
NNNNAAATGCATGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGGGAAAGCATGAACAACGCAACAGG
GCTCATTCCATCCTAAAAGAGTCAATGGCCCATGTTCTTGCCTCTGAGTT
TATTGTATGTCAGTAGTTTGTGACTAATTTATTCCCTACAAAGAAACAAT
AAAGTAATTTTCAACCCTCAATTTATTTTTCTCAGTCCACTAAAATAAAG
AAATTCATAAGTACTACAGCCCTGAGAAGCTGAAGACTTTTCACAGTGTT
TCCGAATTGTGTTTGTGGTATTGTCGTTCTGTGAACTCCGGGCAGATCTG
AGTTTATTTTGTTATTTTTTTCATGTGCTTCTGGAGCCATATACAATGGT
GGTGATTACTTGGTTATTGTTCTAAATTTATATGACATTTTGTATTATAT
TTTTGTTTTTTTTTGCATCGTTCCAAGTTTGTATTGCAGTTATTAATTTC
TAATTTTACCCAGTCTCTTTTTAGTGATTTAATCATATTGCATTATTACA
TCAAAAGAGGAGAAAATTTTGTCCTTCAGCAAAATGGGAAAATATAATAT
TCTCCAATTAAAAATTATGAATAAAACATATTTGATTAGTTTTAATTTTG
TTTACTTTAGTAATTTCAAAGCCATTACTCTATTTTATTTTTAAATTTTA
GGAATTCCATCTCCTACCTTCTCTTCCTGTATTAGATAATTTATTCACCC
AACTTTTGAGTGTGTCAGGCTAGGACTCAGACTATTACTCTTTAATGTAA
GTAAAGTGTCAAATCAGTGGCCTTCTATTCTGAGGGAATCAACAAAATAA
TATCAGGTTATAAAATATAGTCTACTGTGAGAATTTGTAAGGCTTGGATC
TGTGTACATGTGGATAGCATTACATTTTTTTGTAATTATAAAGAAAATAT
TTTTTGTTGCTTGGGCTTCAAGAATATAATTCTGGAAATTTAAAATAACA
TGAATTTCTATAACAACTTGTAAAATTATTCTTATGGGGTCTAAAGTATT
TTTTGGGAAAATTTATTGGAGCTGTATTTTTTTTCAAGTCCACTTTTTTT
TGAATAAAAAAAATTAAAGTTCTAAAATTTTTTTTTTGTCCCAATATAAA
AAAATTTATTGGTGTCTCACNTTATCTTTTTTATATAAATAAAAAAAAAT
ATATATATTGTTGTTTCTATTGTAAGTCCAACTATATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_c12.g1 MSMg01no207_c12.g1 CHROMAT_FILE:
MSMg01no207_c12.g1 PHD_FILE: MSMg01no207_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:43 2005
         (296 letters)



>mm_chr10_17055515_17056209
          Length = 695

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccaagtttgtattgcagttattaatttctaattttacccagtctctttttagtgattt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 491 ttccaagtttgtattgcagttatttatttctaattttacccagtctctttttagtgattt 432

                                                                       
Query: 61  aatcatattgcattattacatcaaaagaggagaaaattttgtccttcagcaaaatgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatcatattgcattattacatcaaaagaggagaaaattttgtccttcagcaaaatgggaa 372

                                                                       
Query: 121 aatataatattctccaattaaaaattatgaataaaacatatttgattagttttaattttg 180
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 371 aatataatattctccaattaaaaattatgaataaagcatatttgattagttttaattt-g 313

                                                                       
Query: 181 tttactttagtaatttcaaagccattactctattttatttttaaattttaggaattccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttactttagtaatttcaaagccattactctattttatttttaaattttaggaattccat 253

                                                               
Query: 241 ctcctaccttctcttcctgtattagataatttattcacccaacttttgagtg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctcctaccttctcttcctgtattagataatttattcacccaacttttgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)