BAC Information

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BAC

Clone NameMSMg01-209B19
Chromosome10 (Build37)
Map Location 52,019,327 - 52,019,641
singlet/doubletsinglet
Overlap geneDcbld1
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
Downstream geneGopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209B19.T7 (MSMg01no209_b19.b1)MSMg01-209B19.TJ (MSMg01no209_b19.g1)
ACCAG391763AG391764
length752741
length of high quality
(start - end)
320 (47 - 366)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no209_b19.b1 PHD_FILE: MSMg01no209_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:08 2005CHROMAT_FILE: MSMg01no209_b19.g1 PHD_FILE: MSMg01no209_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATCCATTTCAGCTATAGAATCAAACACTAACCACCCCCCCC
CCCAAAAAAAAACAAAAACCAACATTTACCACACTGAGCTGACTATGCCA
CAAAAGTCCACCAAACACAGCACATGAAGACTCACAGGGCTGTACAGATG
ATCAAATCACACCAGCACTGTAGCATTTTCTTAACATTCCTCTAAAGAAA
TGTCAACAGACTGTCAAAAGTTTTAACAATGCTTTAACCAAAATAGATAC
AAAAGTAACCATTCCGGGGACTGGAGAGGTGGCTCAGTGGTTATAGTGCT
TCTTGCTCTGGAAGAGGTCCATAGTTCAGTTCCCAGAGCTCCAGCATGGC
CTTGATAGGGACAGAATGGCACAGCTCCTTGAGGACCTCCACAAGTGTCA
TGGCTGCGGTGGGAGTAGTAAGGCTTGTTTGTATAATAATGTACACATTT
TACATTTCTCCTCAAAGGAATGTCCTCTCAGTTAACAGTAATGACTCTGT
AATAATCAGAGATAGTCAGGAAGGGGAAGATGTGGCTAGCACATCAGCAA
AATAGTAAATGCTGGGACTTTCAGAATAGCCGTTAAGGCTGTCTGTGTAA
GAGAACTCAAACACATGAATACAAAAATATCTAATTTCTCAGGGCTGGAG
AGATGGCTCAGCGGTTAAGAGCACTGGCTCTTCTTCCAGATATCCCTGAT
TT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTAGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTAGCGGTTCCTCAGAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGTATATATCCCCACGCCGCCCCAACTGGTAAGAAG
GACATATGCTCCACTATGTTCATAGCAGACTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTGCTA
AACACATGTAACTCATGAAGAATGAAGACTGAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_b19.b1 MSMg01no209_b19.b1 CHROMAT_FILE:
MSMg01no209_b19.b1 PHD_FILE: MSMg01no209_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:08 2005
         (320 letters)



>mm_chr10_52019173_52019891
          Length = 719

 Score =  524 bits (271), Expect = e-153
 Identities = 305/317 (96%), Gaps = 3/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatccatttcagctatagaatcaaacactaaccacccccccccccaaaaaaa 64
           |||||||||||||| || |||||||||||||||||||||||||| |||||||  ||||||
Sbjct: 469 gaattcagcatccacttgagctatagaatcaaacactaaccacctccccccc--aaaaaa 412

                                                                       
Query: 65  aacaaaaaccaacatttaccacactgagctgactatgccacaaaagtccaccaaacacag 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aacaaaaaccaccatttaccacactgagctgactatgccacaaaagtccaccaaacacag 352

                                                                       
Query: 125 ca-catgaagactcacagggctgtacagatgatcaaatcacaccagcactgtagcatttt 183
           ||  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 351 cagtatgaagactcacagggttgtacagatgatcaaatcataccagcactgtagcatttt 292

                                                                       
Query: 184 cttaacattcctctaaagaaatgtcaacagactgtcaaaagttttaacaatgctttaacc 243
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 291 cttaacattcccctaaagaaatgtcaacagactgtcaaaagtattaacaatgctttaacc 232

                                                                       
Query: 244 aaaatagatacaaaagtaaccattccggggactggagaggtggctcagtggttatagtgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaaatagatacaaaagtaaccattccggggactggagaggtggctcagtggttatagtgc 172

                            
Query: 304 ttcttgctctggaagag 320
           |||||||||||||||||
Sbjct: 171 ttcttgctctggaagag 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space:   220810
Effective search space used:   220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)