BAC Information

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BAC

Clone NameMSMg01-210K04
Chromosome10 (Build37)
Map Location 53,067,144 - 53,067,618
singlet/doubletsinglet
Overlap genenone
Upstream geneGopc, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
Downstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210K04.T7 (MSMg01no210_k04.b1)MSMg01-210K04.TJ (MSMg01no210_k04.g1)
ACCAG392675AG392676
length747745
length of high quality
(start - end)		678 (45 - 722)533 (77 - 609)
definitionCHROMAT_FILE: MSMg01no210_k04.b1 PHD_FILE: MSMg01no210_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:15 2005CHROMAT_FILE: MSMg01no210_k04.g1 PHD_FILE: MSMg01no210_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTTGCACCAGCGTACAAGGCTTGTTTACTAGTTAGGCACAGCG
GAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCTCT
CCTCAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGAACAAACCGG
CTTTCCACATCTCCCCCTTTTTATTTTATTAAAATTTAAGGCTGGTGTAG
GCCTGTGTAATTATGCCCATCCGCTGTGGCTCCTGTCTTATGTCGTTCCT
CCAATGTCACAGCCTTTCCTGTCATAGGGTAACCCTATCGCCACCGGGCC
CCGTGTCTTAGGTTGATCTGTGCATGAGGAAAGTTGCCCGTCCCTGGATA
CCGGAATGCTATGTGACATTAACTACTAAATGACCTAGGGTGAACTCTAT
AAAAGAGGCCAGCCACCAATGTCAATTAATTTTTGAGCATAGATAGCCAG
ATTTCAGGGGAGGCCCCTTGCTCCATGGCAGCAAGTGCTTGAGTTATCAC
AACCTTGTCACGTGTTTATTGGGTTCTGAGCTTGCAAACCAACCAGAGCA
TGACCACAAATCCACAGCAGGTGGCAACGCCAAATAAACCTACTCCCACC
CATTCCTTAAAATAAGAAAAGGCAGATGAAATCCAGGAGGAGAGGCCCTC
TGTNCATGACAGGTCCACTCGTGTCGAGGTATCTTTAAGACGGCCGC

TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATGAACAAGATTTCAAATCTAG
ATTAACAATATGAGAGAAAACATGACGCATTTGCCTTCCCGGGTCTGGCA
TGCTTTGATTAATGGAGTGATTTCAAGTCCCATTTGGTTTTCTGCAGAAG
TCACAATTTAATTTTCCTTTATGGCCAAATAAAGTTGCATCGTGTATATG
TACCACATTTTCTTACATGCTCACAGGTGGATGGATCTCTAGGCTGGTTT
TATTTCTAGCTGCTATGAATGTTAGTAAACATGGGACTGTACTCATTTCT
ATGACTTTTAGTAGACTCTTTGGGAATTTAGTCTGGTGAGAACTCAGGTG
TCTTTTGACCTGGCACTTAATTTCTTTGGGCCTTCTATAAAATGAGAAGG
TGGAACCCAGTTCCTTGTACTATTTTGATAATGCTTTCTTTGTATATGAG
CATATAAATCAGCTGCAGTTTTCAAGAAATGAATGGAACACCAAGATTTA
TTGAATTAGTTTAAAGGAACTACTTTATGATAATAACCACATACAGAGAA
ACATGGTGTATTAATCCCTATAAGGTCTGTGGAATAACATGCTAATAGGG
AAATTTCTTTGGAAGATATGCACTAAGGAGCAACCACTCAGGTGTGAATC
TTTGTAGAACACAGTAGAGGGAGGGGGAAGACAGCTAATGGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_k04.g1 MSMg01no210_k04.g1 CHROMAT_FILE:
MSMg01no210_k04.g1 PHD_FILE: MSMg01no210_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:15 2005
         (533 letters)



>mm_chr10_53066686_53067618
          Length = 933

 Score =  895 bits (463), Expect = 0.0
 Identities = 472/475 (99%)
 Strand = Plus / Minus

                                                                       
Query: 59  cttcccgggtctggcatgctttgattaatggagtgatttcaagtcccatttggttttctg 118
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 933 cttcccgggtctggcatgctttgattaatgtagtgatttcaagtcccatttggttttctg 874

                                                                       
Query: 119 cagaagtcacaatttaattttcctttatggccaaataaagttgcatcgtgtatatgtacc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cagaagtcacaatttaattttcctttatggccaaataaagttgcatcgtgtatatgtacc 814

                                                                       
Query: 179 acattttcttacatgctcacaggtggatggatctctaggctggttttatttctagctgct 238
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 813 acattttcttacatgcttacaggtggatggatctctaggctggttttatttctagttgct 754

                                                                       
Query: 239 atgaatgttagtaaacatgggactgtactcatttctatgacttttagtagactctttggg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 atgaatgttagtaaacatgggactgtactcatttctatgacttttagtagactctttggg 694

                                                                       
Query: 299 aatttagtctggtgagaactcaggtgtcttttgacctggcacttaatttctttgggcctt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aatttagtctggtgagaactcaggtgtcttttgacctggcacttaatttctttgggcctt 634

                                                                       
Query: 359 ctataaaatgagaaggtggaacccagttccttgtactattttgataatgctttctttgta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctataaaatgagaaggtggaacccagttccttgtactattttgataatgctttctttgta 574

                                                                       
Query: 419 tatgagcatataaatcagctgcagttttcaagaaatgaatggaacaccaagatttattga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tatgagcatataaatcagctgcagttttcaagaaatgaatggaacaccaagatttattga 514

                                                                  
Query: 479 attagtttaaaggaactactttatgataataaccacatacagagaaacatggtgt 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 attagtttaaaggaactactttatgataataaccacatacagagaaacatggtgt 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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