BAC Information

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BAC

Clone NameMSMg01-210P08
Chromosome10 (Build37)
Map Location 14,107,737 - 14,108,021
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210P08.T7 (MSMg01no210_p08.b1)MSMg01-210P08.TJ (MSMg01no210_p08.g1)
ACCAG392876AG392877
length725728
length of high quality
(start - end)
313 (46 - 358)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no210_p08.b1 PHD_FILE: MSMg01no210_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:42 2005CHROMAT_FILE: MSMg01no210_p08.g1 PHD_FILE: MSMg01no210_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGATTATGTCCCACCCCCCCCCAACGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAA
GAATGAAGAATGAAGTGTGGACCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGTGAGGAAATCCTGTGTTTTG
TTGGTCAAAAGTATCAGCCCATTGTCATATAAAACAAAATAGGTTTTACT
TTTATAGTCTCTGTCTATTTATCATTTGCACAGAAAAAAATATAACCTTG
AATAAAAAACTAAGATAAATGTGATTGGATGCTTATACTTGGGAATCAGA
GTTAAAGTCCCACAGAAAATCTGGATGTTATTCTTATAACTTGTATATAA
AATCTAAATTATTTAAATGATCAGGTTAGCATATTGAGAATATAGATTAG
GCATAGACACTGTTTTATACCCCACCCCACCGCTCAAATTTGAACATTAT
TTCATGGCAAAGAGTGGGTGAATAACATTTACTTTGCATGATTAAGAACC
CTTAAAATCTTAGAATGGATCAATGCATATTAAAATACTCAAAAGGATAA
ATTGGTCTTTGATGCACACACAAAGAGAAATAAAACGCATTAACAATATT
TACCCTTGAGCTTTCTTCTTCCTGATAGCATTAATTCTCTTATTTCGATG
TTTCTTTTTGTGATTCTATAATTAGTGATTACTAGTTTCAATATTTAGTC
CTTGGGTTTCTCCTTTTCCCCAGTCACAGGAAAGAAAAACAAGGAAAAAG
AGAATGAGGAGAGAGGCCAGATAGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_p08.g1 MSMg01no210_p08.g1 CHROMAT_FILE:
MSMg01no210_p08.g1 PHD_FILE: MSMg01no210_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:42 2005
         (285 letters)



>mm_chr10_14107537_14108221
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggtgaggaaatcctgtgttttgttggtcaaaagtatcagcccattgtcatataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttggtgaggaaatcctgtgttttgttggtcaaaagtatcagcccattgtcatataaaac 426

                                                                       
Query: 61  aaaataggttttacttttatagtctctgtctatttatcatttgcacagaaaaaaatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaataggttttacttttatagtctctgtctatttatcatttgcacagaaaaaaatataa 366

                                                                       
Query: 121 ccttgaataaaaaactaagataaatgtgattggatgcttatacttgggaatcagagttaa 180
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 365 ccttgaataaaaaactaagataaatgtgatcggatgcttatacttaggaatcagagttaa 306

                                                                       
Query: 181 agtcccacagaaaatctggatgttattcttataacttgtatataaaatctaaattattta 240
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 agtcccacagaaaacctggatgttattcttataacttgtatataaaatttaaattattta 246

                                                        
Query: 241 aatgatcaggttagcatattgagaatatagattaggcatagacac 285
           ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 245 aatgatcaggttagcatattgagaatatagatttggcatagacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)