BAC Information

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BAC

Clone NameMSMg01-211L07
Chromosome10 (Build37)
Map Location 38,410,965 - 38,411,245
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211L07.T7 (MSMg01no211_l07.b1)MSMg01-211L07.TJ (MSMg01no211_l07.g1)
ACCAG393330AG393331
length715793
length of high quality
(start - end)
158 (106 - 263)285 (129 - 413)
definitionCHROMAT_FILE: MSMg01no211_l07.b1 PHD_FILE: MSMg01no211_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:05 2005CHROMAT_FILE: MSMg01no211_l07.g1 PHD_FILE: MSMg01no211_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGTTTTTAACTGCTGA
GTAGTACTTCATTGTGTTAATGTTAATACATTTTCTGTATCCATTCCTCT
CCTCAGGGACGTAGGGGTTCTTTCCACCTTCTGGCTATTATAAATAAGGC
TGCTATGAACATAGTGGAGCATGTGTCCTTATTACCAGTTGGAACATCTT
CTGGGTATATGTCCACGAGAAGAATTGCTGGATCTTCTGATAGTACTATG
TCCAATTTTCAGAGCACCTGCCAGACTGATTTCCAGAGTGCCTGCACCAC
CTTGCATTCTCACCAGCAAGGTAGGAGTTCCCCTCTTTCTCTTTTTCCTC
CCCCCCCTCTGCTGACACCTGAATTTTTGAATTTAGCCATTCCGACCGCC
ATGAGAAGCAATCTCAGGATTGTCCTTGACTTGCATTTCCCTGATGATTA
AGGATGCTGTACATTTTTTCAGCTGCTTCTCAGACATTCGGTATTCCTCA
GCTCATAATCCCCCGTTTATCTCTGCACCCCACTCCCCCATTACCGCCAC
CCGACCCTCTGGACTCTATTTCTCCCGACTTCTCCCCATTTATTTGATAT
CCCCCCCCCACATGATTTTATTAATGCCATTCCCCCCCTCTTTTTTTGTT
CCCCGGTTTTTTTTTTCCTTATTTGATGCCTCTCCTTTGTCCCACCCACA
CCCTTTTTATTCCCC
TTTTTTCTTTTCTTTTTTTTTCTCCCTCTTTTTTTTCTCCACCNNNNNCC
TCTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACTTTGTGGTGGATTCACC
AGGGAAAATTGACTCTAGGAGTCAAAGTTATAAGCAAACCTGGAAGTAAT
CAGAACGTTGAGATTGTTTTTGCATGGACATGAAAGTCCAGAGTCCTCAG
AGAAGGAACAATCCCAACCAGGCTTCACCATACAGCTAGAATTTATGCCT
TGGCAATCCCTCTGAAGAATTCACAATCAAAACCCAACCTAACCTTTGGG
CCAGACCACTAAACAGGACAGAACTCTGACTTTATGTTTTTAAAAAGAAT
AATGAAAAAGTGTCTCTTTTTTACCACCCCCCCCCCCGCAATGTACCCAG
AACCAAAAGGCAAGATTGCCATGGCTATGGATGATATCTATTGTCTTTCC
CAAGAGTTCAGACATGACTAGTTTTCAGGATAAGATGCTCAACAGATATT
GATTTACCAAATGTGACGGATGTGCATGTTTGTAGGATTTGGCCCTCTTG
TTTCATCATAATATTGATTTTTCCTGGCCCCCTATCCCCAAAGTATTTGA
AATACCCAACCCCACCGCACGCTTTTTTGTATCATATCATTCCTGGCTCC
CCTTTCTTTCTTTTTTTTTTTTCCGCCCCCCACCCCTTTTTTTCTTTTCT
CTATTTTTTTTAAAATGAAATTTCAGCGCTTCTTACATTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_l07.g1 MSMg01no211_l07.g1 CHROMAT_FILE:
MSMg01no211_l07.g1 PHD_FILE: MSMg01no211_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:05 2005
         (285 letters)



>mm_chr10_38410765_38411449
          Length = 685

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggactttgtggtggattcaccagggaaaattgactctaggagtcaaagttataagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggactttgtggtggattcaccagggaaaattgactctaggagtcaaagttataagcaaa 422

                                                                       
Query: 61  cctggaagtaatcagaacgttgagattgtttttgcatggacatgaaagtccagagtcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cctggaagtaatcagaacgttgagattgtttttgcatggacatgaaagtccagagtcctc 362

                                                                       
Query: 121 agagaaggaacaatcccaaccaggcttcaccatacagctagaatttatgccttggcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agagaaggaacaatcccaaccaggcttcaccatacagctagaatttatgccttggcaatc 302

                                                                       
Query: 181 cctctgaagaattcacaatcaaaacccaacctaacctttgggccagaccactaaacagga 240
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 cctctgaagagttcacaatcaaaacccaacctaacctttgggtcagaccactaaacagga 242

                                                     
Query: 241 cagaactc-tgactttatgtttttaaaaagaataatgaaaaa 281
           |||||| | |||||||||||||||||||||||||||||||||
Sbjct: 241 cagaac-catgactttatgtttttaaaaagaataatgaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)