BAC Information

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BAC

Clone NameMSMg01-212H24
Chromosome10 (Build37)
Map Location 23,744,906 - 23,745,192
singlet/doubletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps
Downstream geneTaar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212H24.T7 (MSMg01no212_h24.b1)MSMg01-212H24.TJ (MSMg01no212_h24.g1)
ACCAG393832AG393833
length750751
length of high quality
(start - end)
231 (125 - 355)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no212_h24.b1 PHD_FILE: MSMg01no212_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:17 2005CHROMAT_FILE: MSMg01no212_h24.g1 PHD_FILE: MSMg01no212_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACGAGGAAACTAGAATGGCCAAGAAGCACCTAAAGAAATGTTCA
ACATCTTTGGTCATCATGTACCCGCAAATCAAAATGACCCTGAGATTCCA
CTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGATGGCAGCAGAT
GCTGGTGAGGATGTGGAGAAAGAGGAACACTTATCCATTACTGGTGGGAT
TGCAAGCTGTTACAACCACTCTGGAAATTAGTCTGGTGGTTCCTCAGAAA
ATTGGACATAGTGCTATCTGAGGACCCAGCAATATTCCTGGGCATATACC
CAGAAGAGGTTTTTATATGCCCCCCCCACACCTGCTCCACTATGTTCATA
GCAGCCATATTTATAATAGCCAGACGCAGGAAACAACCCAGATGTCCCTC
ACCAGAGGAACTGATAGAGAAAATGTGGTACACTTACACAATGGAGTACT
ACTCAGCTATTAAAAATGATGACTTCACAAAATTCGCAGGCAAATGAATG
GATCTAGAAAATATCATTCTGAGTGAAGTAACTCAGTCACAAAAGAACAC
ACATGGTATGTACTCACTGATAAGTGGATATTAGGCAAAGAGCATGGAAT
ACCCATGATAAAACTCATGGACCGCATGAAGCTCAAGAGGAAGGAAGACG
AATAATTGGATACTTCAGTTCTATTAGTATGGCGAACAATATAATCCAAG

TTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTCACTTTATCTGTAATTTTGTGT
GTCCAGTGTCATAATATACAGTTATGTTCTTTTTATTTCCTACAAATAAC
AATATTTTTTTACAATGTTGTTAATAAAAGAAAAACCCCATAATGTAGAA
TAAGATATGGGAAAAGAATAGATTGTTTAAGAAATGATATTGGAGTATAG
GGTTATTTAAAAACTACTAAGGAAGTTATTCAGATCTTTCATAAAATTAA
AATAAACTTCTTTGGATATCAAATATTACAGGAAAATATCAGTTTAATTT
CTTGGACAAATATTTTTATTACCCCCCCCCCCCCGCAGATTTTGGGATAT
TTGTCATAGAAATGGAAACTAAAACCATAATGAATGTTTGAAATTGTGAC
CTATAGAAATTTTACATGACCCCTGAGATATATTAAAAAGTAATATGGTG
CCATCTGAAATTCATACAATTAAAACTAAATCAATAATCCCTAAATCATA
AACTATAGGCAAGACATCTCAAATAATAAAATGGATAGTTTACAATAAAA
CAGAGAATGAAATATTATTTCTTCTCATTATTTTTGGCATCTGTATGAGT
GTCTACATGTGAATGCACATGTATAGAATCCTACAGGTGACCTTGGGACA
CTTGTATACTTGTAATCCCATGATTCTTTGAGGCAAATCTCTCACCTGAA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_h24.g1 MSMg01no212_h24.g1 CHROMAT_FILE:
MSMg01no212_h24.g1 PHD_FILE: MSMg01no212_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:17 2005
         (287 letters)



>mm_chr10_23744706_23745392
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcactttatctgtaattttgtgtgtccagtgtcataatatacagttatgttctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttcactttatctgtaattttgtgtgtccagtgtcataatatacagttatgttctttt 260

                                                                       
Query: 61  tatttcctacaaataacaatatttttttacaatgttgttaataaaagaaaaaccccataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttcctacaaataacaatatttttttacaatgttgttaataaaagaaaaaccccataa 320

                                                                       
Query: 121 tgtagaataagatatgggaaaagaatagattgtttaagaaatgatattggagtatagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagaataagatatgggaaaagaatagattgtttaagaaatgatattggagtatagggt 380

                                                                       
Query: 181 tatttaaaaactactaaggaagttattcagatctttcataaaattaaaataaacttcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttaaaaactactaaggaagttattcagatctttcataaaattaaaataaacttcttt 440

                                                          
Query: 241 ggatatcaaatattacaggaaaatatcagtttaatttcttggacaaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatatcaaatattacaggaaaatatcagtttaatttcttggacaaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)