BAC Information

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BAC

Clone NameMSMg01-217H22
Chromosome10 (Build37)
Map Location 5,797,177 - 5,797,462
singlet/doubletsinglet
Overlap geneGm221
Upstream geneSyne1, Esr1, LOC100041310
Downstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217H22.T7 (MSMg01no217_h22.b1)MSMg01-217H22.TJ (MSMg01no217_h22.g1)
ACCAG397005AG397006
length758769
length of high quality
(start - end)
69 (48 - 116)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no217_h22.b1 PHD_FILE: MSMg01no217_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:04 2005CHROMAT_FILE: MSMg01no217_h22.g1 PHD_FILE: MSMg01no217_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGATTC
CTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAAT
GCTTTTTCTGCATCTAACGCGATGATCATGTGGTTTTTGNNNNNGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN
TTTTTNNNNNNNNTTNTNNNTTTNNTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTNTTNTTTTTTTNTTTTTTNNTTTTTTTTTTTTTTNNNNNTTNNNNN
TNNNNNTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TTTTTTTTTTTCCCNNNCCCCNNNCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCCCCCCCCCAAAAAAAAAAAAAAAAATGGGGGGGGGGGGTGGT
CCTCCCCCTTTTCCCCCCCCGCTTTCCCGCCTTTTTTCCTTCCCTCTTTC
CCCCTTTCTTTTCCCCCCCTCCCCCTCCCCCTTTTCCTTCTCCTTCTTCC
CCCCCCTCTCCCTTCTTTCTCCCTTTTCCTTTCCCCTTCTTCTTCCGCCC
CCCCCCTCTTTCTTTTACCCCCTTTTTTTCCCCTTCCCCTTTTCCCCTCT
TTTTTTTTCCCCCCTATTTTTACCCCTTCACCCTCCTACTTCCTCTCACC
CATCTCCCCTCACTCCCTTTTTTCCTTCCCCCCCCCCCCTTACTTTCTCT
TCTTTTTT
AATCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCTATAAAATACAGGA
CAAAAGAGCCCCCAGAATATATGAGTAAAACCAAGTCAGTTCTCCACAGC
TGCTTCATCCAATATTCTGTGCCTCATAATCAAAATGTAAAATTACTTTT
AAGACGAATAAAATAGGCTTATCAAGAGCAGAATAAGTAGAAAATAATAA
GACACAGACAAATCCTCTTCAGTGCTCAGTGGACACGATCCCTGTACCCG
TGTTTTATGAAACAAGAGCAGGGCCCCATCATATTATTAACCTGCCCTGG
ATAGTCTGAGCCCCTTATAATTTTTTTTCCCCCCCCCCCCCCCANAGGTN
AATATATTCTTACAGAGAGTGTACCCCCCCCACTAAAAAAAAATATTTGC
TTACGGAGTTTGATTCTCACTTCTTTTCTTCTTGTTCTTTTTCTTTCTCT
TCTTTCCTTCTTTCCGTTCCTTTTCCTTTCCTCTTTTTCTATCTTTTTCT
TTTCTCTCCCCGTCTTTCCCTTCTTTCCCTTTTTCTTCTTATTCTTTCTT
CCTTTTTTCTTTTTTTTTTTTCCCTCTCTTTTCTCTTTTCTTTTTCTCTC
TTTTCTTCTTTCTTTCTTTTAACCTTTTCTTTTCTTCTTCTCCCTTATTT
TCCCCTCTCCTCTTCCATTTTTTTTTCCTCCCCCTTTCCTACCGCCCTCT
CGTTCTTTTTTCCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_h22.g1 MSMg01no217_h22.g1 CHROMAT_FILE:
MSMg01no217_h22.g1 PHD_FILE: MSMg01no217_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:04 2005
         (288 letters)



>mm_chr10_5796977_5797665
          Length = 689

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagctataaaatacaggacaaaagagcccccagaatatatgagtaaaaccaagtcagt 60
           |||||||| |||||||||||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 201 tgtagctacaaaatacaggacaaaagagcccccagaatatatgaggaaaaaaaagtcagt 260

                                                                       
Query: 61  tctccacagctgcttcatccaatattctgtgcctcataatcaaaatgtaaaattactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccacagctgcttcatccaatattctgtgcctcataatcaaaatgtaaaattactttt 320

                                                                       
Query: 121 aagacgaataaaataggcttatcaagagcagaataagtagaaaataataagacacagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacgaataaaataggcttatcaagagcagaataagtagaaaataataagacacagaca 380

                                                                       
Query: 181 aatcctcttcagtgctcagtggacacgatccctgtacccgtgttttatgaaacaagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctcttcagtgctcagtggacacgatccctgtacccgtgttttatgaaacaagagca 440

                                                         
Query: 241 gggccccatcatattattaacctgccctggatagtctgag-cccct 285
           ||||||||||||| ||  |||||||||||||||||||||| |||||
Sbjct: 441 gggccccatcatactaaaaacctgccctggatagtctgaggcccct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)