Query= MSMg01no217_j21.b1 MSMg01no217_j21.b1 CHROMAT_FILE:
MSMg01no217_j21.b1 PHD_FILE: MSMg01no217_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:16 2005
(179 letters)
>mm_chr10_64008532_64009111
Length = 580
Score = 302 bits (156), Expect = 1e-86
Identities = 174/180 (96%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 1 cttatcaaagagaagccagttcatagaaaggaaaagcaaccaatgagagatacaggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttatcaaagagaagccagttcatagaaaggaaaagcaaccaatgagagatacaggagcc 320
Query: 61 agggccaggagatgtgttctgagaatgcagggaaggcagagatagtgagaactcacat-t 119
|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 319 aggggcaggaggtgtgttctgagaatgcaggaaaggcagagatagtgagaactcacatgt 260
Query: 120 cgtccactgcttctaggagtattctaatcactggttgttggtttttgttgttgtt-gttt 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 259 -gtccactgcttctaggagtattctaatcactggttgttggtttttgttgttgtttgttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space: 97812
Effective search space used: 97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no217_j21.g1 MSMg01no217_j21.g1 CHROMAT_FILE:
MSMg01no217_j21.g1 PHD_FILE: MSMg01no217_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:17 2005
(519 letters)
>mm_chr10_63930511_63931428
Length = 918
Score = 859 bits (444), Expect = 0.0
Identities = 500/528 (94%), Gaps = 21/528 (3%)
Strand = Plus / Plus
Query: 1 agacactattaggctgcttgctctgtggatcattaggataaag---aaaaaccctcaggt 57
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 agacattattaggctgcttgctctgtggatcattaggataaagaaaaaaaa--ctcaggt 258
Query: 58 cccctgctacacatgcttgcctgcggtactaagctttgacatttctggatagcgctaaca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cccctgctacacatgcttgcctgcggtactaagctttgacatttctggatagcgctaaca 318
Query: 118 gtttttaatgtgagactcattctagaactgtgctttttaatttgttttccctgtgaaagg 177
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtttcaatgtgagactcattctagaactgtgctttttaatttgttttccctgtgaaagg 378
Query: 178 cctaagacacatgtaccttgccttttactgatgggaggggaatgtggtctttccctttta 237
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 379 cctaagacacatgtaccttgcattttactgatgggagggga-tgtggtctttccctttta 437
Query: 238 tctcaaatatatctctggtgctctgtgagaacatctaacctctgcaagtttgcactacac 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctcaaataaatctctggtgctctgtgagaacatctaacctctgcaagtttgcactacac 497
Query: 298 caaaacagaaagtgaaagcaaaagaagacacaacgttaaatctcagacccccc------a 351
||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 498 caaaacagaaagtgaaagcaaaagaagacacaatgttaaatctcaga------gtaaata 551
Query: 352 cccattctgcatttcaggtatgaatattagaattttctcaccaaaccacacattttatat 411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cccattctgcatttcaggtacgaatattagaattttctcaccaaaccacacattttatat 611
Query: 412 tattttttgaaaagcaacatacaataaagttaaacttaatattatttacatagatggcgt 471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tattttt-gaaaagcaacatacaataaagttaaacttaatattatttacatagatggcgt 670
Query: 472 cacacgtaggtactctgaagtgaatactttgaataaaaaaaaagactt 519
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 671 cacacgtaggtactctgaagtgaatactttgaataaaaaaa--gactt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
