BAC Information

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BAC

Clone NameMSMg01-218F19
Chromosome10 (Build37)
Map Location 91,334,248 - 91,334,530
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218F19.T7 (MSMg01no218_f19.b1)MSMg01-218F19.TJ (MSMg01no218_f19.g1)
ACCAG397559AG397560
length781723
length of high quality
(start - end)
99 (44 - 142)283 (73 - 355)
definitionCHROMAT_FILE: MSMg01no218_f19.b1 PHD_FILE: MSMg01no218_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:21 2005CHROMAT_FILE: MSMg01no218_f19.g1 PHD_FILE: MSMg01no218_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAATCCCTACCCTCTTTCTTTTAGAAAGAAAATGGAAACTGTGGAT
GGGGGATATTTAATTGATTTGTTGAATTAATGTTTGGCTGGNAATGNCGN
AATTCCTTTTCAACAGTATACATTCTACATTATCTCACTTTCCATTCAAT
AACACATCTTGCTGCCCTGCACACACACTGCGTAGATCAACCAACTTCTT
TTCTTTGACCACATTCCACCTCTGATGCACTTGTCTTAACATACCTATGT
CAGACAACCCAACCTACTTTTTTTTTTATTACCCCCATCCTTGCCCCCTT
GCCCATTATTTAGATGAGACCCCAAAAACAAAAACCCTTAATTATTAGTT
TTATGATTATGTGAATATTTCCCCCCCCTTAAAAAAAAAAAAACTCCTTC
GGTGGGGGGCGGGCTTCCTCCTCTTTTCACTTTTCCTCCCCTTATTACCT
TCCATTTCCCTTCTTCTTCCTTTCCCCTATCTTATTTTACCTTTTCCCCC
TTTATTATCACTCCTACTCCCCTCCCCCTCCCTTCTCTCCTCCCCCCTTT
ATTATTCCCCCTTCCTCCTCCTTTCTTCTCACCTTCAACTTCACTCTCCC
TTTTTTTTACCTTCACTTTATTTTCACCACTCGCCCCCCACTTCTCTCTT
TCTTCTTCCTCTACCTCTCTTTATCCTCCTCTCCTTTCCTTCATCCCTTT
CCCTTCCTTTTTCCCCTCCCTTATTCTTACC
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGGGAACTTACAAACCAGAACATAAA
ACTGATAACAGAGGAAATCATGTTCTGTGATAAATACTACCAGTATATGG
GGAAAAATCTGGAGAAACAGAGGTATAAAGACCTATCTTGAAGGACCACT
CGTGAAAGGTAAGATCTGACCCGAACTGAACTGTAGCGTTGTGTAGTAGG
TGCCCATTGGGATGAAAATAAACGACTTTGCATGCAAAGAAATGGGACAT
AGAATACTACAGAAATGATGCCTTAGATTACAGATGAAAGAATAACGCTT
GCGGTGACTTCATTANCTCCCNGAACCGAGGCCAAGGAAACCAAAGTAGA
ATTAATGGCAAGGAGCTCACAAATAGAAAAAATAATTCTGCCGCGCGGTA
ATGGGGATGCATGGCTCACGAAGTCCTTTTTTCTTGCTACAAGAATGAGA
GACATTTGACAAATGTTGACATTTCTGAGAAATTATGACTTATTGGATAG
ATAACAGATATTTTATTGGAGATATTTAGGTTGAGTCTGTTAAAGAATCA
AATAGTCACAATAGCTTTATGCTCTATAGCATGGAGTATCTGCCATTGGG
GAGATACAAGAGGTTTGTTAGTAGCAAGTTAACATGAGCTGATGTGTCCA
AGCAATGTGGGGACTGTGTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_f19.g1 MSMg01no218_f19.g1 CHROMAT_FILE:
MSMg01no218_f19.g1 PHD_FILE: MSMg01no218_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:21 2005
         (283 letters)



>mm_chr10_91334048_91334730
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagggaacttacaaaccagaacataaaactgataacagaggaaatcatgttctgtgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagggaacttacaaaccagaacataaaactgataacagaggaaatcatgttctgtgata 260

                                                                       
Query: 61  aatactaccagtatatggggaaaaatctggagaaacagaggtataaagacctatcttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatactaccagtatatggggaaaaatctggagaaacagaggtataaagacctatcttgaa 320

                                                                       
Query: 121 ggaccactcgtgaaaggtaagatctgacccgaactgaactgtagcgttgtgtagtaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ggaccactcgtgaaaggtaagatctgacccgaactgaactgtagcattgtgtagtaggtg 380

                                                                       
Query: 181 cccattgggatgaaaataaacgactttgcatgcaaagaaatgggacatagaatactacag 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 cccattgggatgaaaataaacgactttgcatgcaaagaaatgggacatggaatactacag 440

                                                      
Query: 241 aaatgatgccttagattacagatgaaagaataacgcttgcggt 283
           |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgatgccatagattacagatgaaagaataacgcttgcggt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)