BAC Information

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BAC

Clone NameMSMg01-232F05
Chromosome10 (Build37)
Map Location 127,383,716 - 127,383,952
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro
Downstream geneLOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232F05.T7 (MSMg01no232_f05.b1)MSMg01-232F05.TJ (MSMg01no232_f05.g1)
ACCAG398870AG398871
length770784
length of high quality
(start - end)		310 (46 - 355)233 (74 - 306)
definitionCHROMAT_FILE: MSMg01no232_f05.b1 PHD_FILE: MSMg01no232_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:47 2005CHROMAT_FILE: MSMg01no232_f05.g1 PHD_FILE: MSMg01no232_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCGTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGTGTTCCTTATATATATTGGATATTAGTCCCCT
ATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCTTCAAGCAGCCCCTCTTATAGTGGG
CTTTGCTATCTTGGTGTTGCTAGGTAACTGTGGGGAGGCGTCTAGCCAGA
ATACCAGAAGCTTGGGACATTGTCTTCGTGACTGCTAACCACATGTCTCT
CCTGTGAGGGCTGTTTTTTTCCCCACCCCCACCGGAGCCAGGAGTCCAGG
AGACTTGATCGAAAGTCTTCCCCCCCAAGTATGTTGAAATTACCACTCCA
CTGAGTCCCACGGCGGTTCTCCGTGCCCTACTTTCTCCCCTCCTTTCTCC
CTTTTCCTTCCTTCTCTCCCCCCTCCTTGCCTTTTCCCTCTTTCCTTTTT
CCCTTTCTTCTTCACTTCTTTTCCCCTTTTCCCCCCCCCTTCTTTTTTTT
TTCTCTCTCCTTCCCCCCCCCTTTATTTCCCCCCTTTTCCTTTCCCTCTT
TTTATTACTCTTCTTTTTCCCCTTCCCCCCCTTCCTTCCCCTTCCCTTCC
CCTTCACCCCTTTTCCCCTTTTCTTCCGTTTCTTCCCACCCTTTTCCCCC
CTTTTTCCCCCTTCCCTTCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCTCTGTCTGGACAGAAACTCTGG
AATGAGCAAGTACTCCTAGAGCTGATAACCCTGAGTCACAGAAACTCACA
GAGCAGCCTTCCAAACCCAGAACCAGAGGTCTACGTCTCAAGCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTCCCTTCCTTCCTTCCTTCCTTCCTCCCTCTCTCTTCTC
TTCTCTTCTCCTCTCCTCTCTTTTCTTCTCTTCTCTTCCCTTCTCTTCTC
TTCTCTTCTCTTCTCTTCTCCCCTCTTCCCTTCTTCTCTCCCCTTCTTTA
TCCTTTCCTCTTCTCCCCCCCCTCCTCTTCATTATCCTCTCCTCGCCTCT
CCTCTACTCTTCATCTCTTCTTCTCTAATCTCCATAACCCCTGACAAACA
ACAAATCTCTATTTATCTCTAGCTCCTATTTTTAATAACCCCCAAATTTT
TATTTATCATCATTGTAATACATTTACGCTTTTTGTCGTACCTTCTAACT
TTTTCTAATACCCCCTTTTTTTCTATTTTGTTCCGGTTTCCTTATGTTCT
CTACCCACAATCTCCTTTCTCCACCCATATTATCTTCCCTGACATATCTC
TCCGCACACGTCCCAACCACTTATAACCCTCCTCATTTTTACACTCTACC
GGCATTTTTTGTGTTTTTTCACCCGTTTTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_f05.g1 MSMg01no232_f05.g1 CHROMAT_FILE:
MSMg01no232_f05.g1 PHD_FILE: MSMg01no232_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:47 2005
         (233 letters)



>mm_chr10_127383634_127384266
          Length = 633

 Score =  360 bits (186), Expect = e-104
 Identities = 225/238 (94%), Gaps = 6/238 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctctgtctggacagaaactctggaatgagcaagtactcctagagctgataaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttgctctgtctggacagaaactctggaatgagcaagtactcctagagctgataaccctg 260

                                                                       
Query: 61  agtcacagaaactcacagagcagccttccaaacccagaaccagaggtctacgtctcaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtcacagaaactcacagagcagccttccaaacccagaaccagaggtctacgtctcaagc 200

                                                                       
Query: 121 ttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 199 ttccttccttccttccttccttccttccttccttccttccttccttccttccttcctccc 140

                                                                     
Query: 181 ttccttcctcccttccttcct-tcct-tc-cttcctc-cctctc-tcttctcttctct 233
           | ||| ||||||| ||| ||| |||| || || |||| |||||| ||| |||| ||||
Sbjct: 139 tccctccctccctccctccctctcctctctct-cctctcctctcctctcctctcctct 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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