Query= MSMg01no232_k12.b1 MSMg01no232_k12.b1 CHROMAT_FILE:
MSMg01no232_k12.b1 PHD_FILE: MSMg01no232_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:11 2005
(312 letters)
>mm_chr10_31560105_31560817
Length = 713
Score = 530 bits (274), Expect = e-155
Identities = 301/310 (97%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattctctttgtttgaatcctcagtcttgcccttatctcactctccaaacctag 63
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 513 ggaattcattctccttgtttgaatcctcagtcttacccttatctcactctccaaacctag 454
Query: 64 catgcagcagactcccttacctctttgttgtatctaagggtctaaagcctataatgacat 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacgcagcagactcccttacctctttgttgtatctaagggtctaaagcctataatgacat 394
Query: 124 caatat-agaaaatcttaaattcaatattactgatattggtatcaatattccaatattta 182
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caatgtaaaaaaatcttaaattcaatattactgatattggtatcaatattccaatattta 334
Query: 183 gtgctgaatgaaagtaccctaaattgagatgtcttaaaacaataacaccaacagaaaaat 242
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgccgaatgaaagtatcctaaattgagatgtcttaaaacaataacaccaacagaaaaat 274
Query: 243 acactccttcaaagctttggagtttagatttttgaaatctagttgtacttatggcaattg 302
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acactctttcaaagctttggagtttagatttttgaaatctagttgtacttatggcaattg 214
Query: 303 taacccttgt 312
||||||||||
Sbjct: 213 taacccttgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space: 213312
Effective search space used: 213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_k12.g1 MSMg01no232_k12.g1 CHROMAT_FILE:
MSMg01no232_k12.g1 PHD_FILE: MSMg01no232_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:12 2005
(652 letters)
>mm_chr10_31467085_31468136
Length = 1052
Score = 1141 bits (590), Expect = 0.0
Identities = 642/670 (95%), Gaps = 18/670 (2%)
Strand = Plus / Plus
Query: 1 tatgttttgttattatacagaacagtgagtttcattatgtgatttttcatataaattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tatgttttgttattatacagaacagtgagtttcattatgtgatttttcatataaattaat 242
Query: 61 cctcataccctgttcttttatatattcccaatgcccaccatcattacatttcatttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cctcataccctgttcttttatatattcccaatgcccaccatcattacatttcatttctct 302
Query: 121 tactgtttctttctccattcaaatgctttcccttctgatttcatgtcatata--tgtgtg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 303 tactgtttctttctccattcaaatgctttcccttctgatttcatgtcatatatgtgtgtg 362
Query: 179 tgtgcatatatatagga----------------atatatatacatatatatataacatat 222
||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 363 tgtgcatatatataggaatatatatatatatatatatatatatatatatatataacatat 422
Query: 223 gtaattatagtaatatatacatacatatatattcctataattacatatgtaatatgtaat 282
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtaattatagtaatatatacgtacatatatattcctataattacatatgtaatatgtaat 482
Query: 283 tttagattctttgcccaaataaaagaaaatattccatctttctttctcatattccccttt 342
||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 483 tttagattctttgtgcaaataagagaagatattccatctttctttctcatatttcccttt 542
Query: 343 ccacttcgtaaatcttttccttatcctttaacttcatcctttctactctcatgtcctatg 402
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 543 ccacttcgtaaatcttttcctcatcctctaacttcatcctttctactctcatgtcctatg 602
Query: 403 tgtatttatgtatgcctatgtaaatatatacttaaatttggagtttgcatgtgacagaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtatttatgtatgcctatgtaaatatatacttaaatttggagtttgcatgtgacagaaa 662
Query: 463 aatatacaatatttatctttctcagtggctttctaaaaacttatttcaggtctacctact 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 663 aatatacaatatttatctttctcagtggctttctaaaaacttatttcaggtctatctact 722
Query: 523 tttctgcaaatgacatgtgtatttcattttctctatctatccatctatggatggccatct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttctgcaaatgacatgtgtatttcattttctctatctatccatctatggatggccatct 782
Query: 583 aaactgatgcctcaacttgcctatatatagtcaataatgtagcaattaacacagatgtga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aaactgatgcctcaacttgcctatatatagtcaataatgtagcaattaacacagatgtga 842
Query: 643 aagtaaaagg 652
||||||||||
Sbjct: 843 aagtaaaagg 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
