Query= MSMg01no232_n17.b1 MSMg01no232_n17.b1 CHROMAT_FILE:
MSMg01no232_n17.b1 PHD_FILE: MSMg01no232_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:26 2005
(597 letters)
>mm_chr10_4099923_4100919
Length = 997
Score = 880 bits (455), Expect = 0.0
Identities = 515/539 (95%), Gaps = 8/539 (1%)
Strand = Plus / Minus
Query: 9 tctcagacttacactagtggccaactctgttgtcagggttctcagatcctcaaccttgaa 68
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tctcagaattacactagtggccaactctgttgtcagggttctcagatcctcaaccttgaa 476
Query: 69 gtaa----tagccccaccatttggtttctatgttttcatagccagcatcccaagatttcc 124
|||| ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtaagagctag----accattttgtttctatgttttcatagccagcatcccaagatttcc 420
Query: 125 agtctgcagacaggttaaaatagaactttacagccttcgggtttgtttgaatcaattacc 184
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 419 agtctgcaaacaggttaaaatagaactttacagccttcgggtttgtttgaatcaatcccc 360
Query: 185 ctaataatgcctctcagctactatctagatctatattctatttgttatatgcctcagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctaataatgcctctcagctactatctagatctatattctatttgttatatgcctcagaga 300
Query: 245 accttgattgagatagcacaagaaaatgattaaagcttgtcttttctcagctttcccact 304
||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 299 accttgactgagatagcacaagaaaatgattaaagctcgtcttttctcagctttaccact 240
Query: 305 attgcaatgtaatttattaaagctttactcagattcggtttgtgagaattttcttgaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 239 attgcaatgtaatttattaaagctttactcagattcggtttgtgagaattttcttgagta 180
Query: 365 tttttgcacccccattcataaaggaaattggtgttaagttctctttcttttttgggtctt 424
|||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 179 tttttgcatcaatattcataaaggaaattggtcttaagttctctttcttttttggatctt 120
Query: 425 tgtgtagtttaggtataagcgtaattgtggcttcatagaacagtttagtagtgttccttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgtgtagtttaggtataagcgtaattgtggcttcatagaacagtttagtagtgttccttc 60
Query: 485 tgttactattttgtagaataatttgaagagtattggtattaggtctttcttgaaggtct 543
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 59 tgttactattttgtagaataatttgaagagtattggtattaggtcttttttgaaggtct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_n17.g1 MSMg01no232_n17.g1 CHROMAT_FILE:
MSMg01no232_n17.g1 PHD_FILE: MSMg01no232_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:27 2005
(652 letters)
>mm_chr10_3987061_3988112
Length = 1052
Score = 1164 bits (602), Expect = 0.0
Identities = 642/660 (97%), Gaps = 8/660 (1%)
Strand = Plus / Plus
Query: 1 atttcctattgttgaactgattgggagaacagcctatagtcaaagtcagaaacacaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atttcctattgttgaactgattgggagaacagcctatagtcaaagtcagaaacacaaagg 252
Query: 61 gacctgaaaacggtcaacacctactccatgaagtggatagaagcgaacatccttatcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gacctgaaaacggtcaacacctactccatgaagtggatagaagcgaacatccttatcctg 312
Query: 121 gtgaaggaggcacatacaatctcacaggttccccatagatggtcagaagtaaagcatact 180
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 313 gtgaaggaggcatatacaatcacataggttccccatagatggtcagaagtaaagcatact 372
Query: 181 acagacatgacagcctttcagagtacagtcatcccctatgttatagtttggagttaaaac 240
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 373 acaggcatgacagcctttcagagtacagtcagcccctatgttatagtttggagttaaaac 432
Query: 241 actccacgacctcacatgtttaaacagttggttcctgtatggtgatgttgttgtaagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actccacgacctcacatgtttaaacagttggttcctgtatggtgatgttgttgtaagagg 492
Query: 301 ttatagaa--------tgtacgaattgtccacaaagcataaggatatgagcccgcagttt 352
|||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct: 493 ttatagaaccttctaatgtacgaattgtccacaaagcataaggatatgagttcggagttt 552
Query: 353 taggttatattacagcctggatccagcaaatgtctcagcttcctagtctactgatatgta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taggttatattacagcctggatccagcaaatgtctcagcttcctagtctactgatatgta 612
Query: 413 agcaagctatgctgtttgtttctactgtcagagcagtgagccattctcatcacacccatc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agcaagctatgctgtttgtttctactgtcagagcagtgagccattctcatcacacccatc 672
Query: 473 aatgtaccttctccactatgacagactatgtcctttccaaatctgccacatccattccag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aatgtaccttctccactatgacagactatgtcctttccaaatctgccacatccattccag 732
Query: 533 tagtgacccacgtgacaggcccaaaagcctggacacggtctcaaggtgaaaagttcacag 592
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 733 tagtgacccacgtgacaggcccaaaagcctggacacagtttcaaggtgaaaagttcacag 792
Query: 593 aaacttagtctcctgaaaccgtggcatcctgtaataatgaatgctccaaatctgtctttg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aaacttagtctcctgaaaccgtggcatcctgtaataatgaatgctccaaatctgtctttg 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
