BAC Information

Click to search

BAC

Clone NameMSMg01-234H22
Chromosome10 (Build37)
Map Location 27,313,011 - 27,313,161
singlet/doubletsinglet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234H22.T7 (MSMg01no234_h22.b1)MSMg01-234H22.TJ (MSMg01no234_h22.g1)
ACCAG400367
length729717
length of high quality
(start - end)
---151 (134 - 284)
definitionCHROMAT_FILE: MSMg01no234_h22.b1 PHD_FILE: MSMg01no234_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:30 2005CHROMAT_FILE: MSMg01no234_h22.g1 PHD_FILE: MSMg01no234_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGC
GAAAAACTCTTATTGTTGAGTAAAATATTTGAAATTCCTTTTATAATGAA
ATTTTTCCCAGGATACATGACGTCAAAGGAATGTAGTGCACAAAATACAA
TTCCAATGAATGGTTTACAAAAAGAATTCAGTGAAATAATTTCACTGTGA
GACTCTGGTATTGTTCAAATACACATGCTAAATTTGAACATCAGTAATTT
ACAGAGTGAATTATAATAAATTCGACATCCTAGTGCAAAAAACCATACAC
AAACCTATTATTATTGGACAAAATATGTTGATAACAAATAAGGAATTATT
TATTCTACCCCCGCCCCCAACTATTTATGAATGGACTATAAAAATAAATC
ATAGACTGCGCATAAGGAACAGATATCTTAATCACGTGGTAAATGGATAT
ATGTTTCATTTGATAGTATGACAAATCAATATATCTTACTACATTCTTTA
AAACATGCATTTTAACTTTGTTATAGGCATATTCTAAATAAATCCAAATA
CTATCATGTATAAATATTGTTATGATGATACAATTTTCATGTTAAATTTC
TCAGACTTCANATGTTTCTTTCAGTGCTGAGTGATAATGTGCAATTTATG
TATAAGCTGAATCCATTTTAAGATGTAAAATATATGGAGTTTTGACCCCT
TGTCATGATCAGTCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_h22.g1 MSMg01no234_h22.g1 CHROMAT_FILE:
MSMg01no234_h22.g1 PHD_FILE: MSMg01no234_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:30 2005
         (151 letters)



>mm_chr10_27312811_27313361
          Length = 551

 Score =  253 bits (131), Expect = 3e-72
 Identities = 146/151 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgcacaaaatacaattccaatgaatggtttacaaaaagaattcagtgaaataatttc 60
           ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgcacagaatacaattccaatgagtggtttacaaaaagaattcagtgaaataatttc 260

                                                                       
Query: 61  actgtgagactctggtattgttcaaatacacatgctaaatttgaacatcagtaatttaca 120
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 261 actgtgagactctggtattgttcaaatacacatgctagttttgaacatcagtaatttaca 320

                                          
Query: 121 gagtgaattataataaattcgacatcctagt 151
           |||||||||||||||||||| ||||||||||
Sbjct: 321 gagtgaattataataaattcaacatcctagt 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)