BAC Information

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BAC

Clone NameMSMg01-235F10
Chromosome10 (Build37)
Map Location 100,273,370 - 100,273,785
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235F10.T7 (MSMg01no235_f10.b1)MSMg01-235F10.TJ (MSMg01no235_f10.g1)
ACCAG400943AG400944
length723730
length of high quality
(start - end)		572 (46 - 617)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no235_f10.b1 PHD_FILE: MSMg01no235_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:38 2005CHROMAT_FILE: MSMg01no235_f10.g1 PHD_FILE: MSMg01no235_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGTTTGACTCACTCTTTCATGCATACAGTCTACAATTTTTTG
ATTTAGTTTAGATAAATATAATATAGCGCAAATGTATCCAGGAACTATTC
TACAACAGATACAATGCTATTCCTCTGATATTTATTTGAACATTTATTTT
TTATTTATTTGTGGGCACACGTACATGTGCCATGGCATGTAAGCACAAGT
CTGAAGACGCTCAGGAGCAGCTGGCGCAACCTTGGTTCCGGGCCTCCGCC
GAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCACCACAGAACCGG
ACAGCTTCTGGAACAGGGGAGCCACAGAGCCACTAAGGCAGCACCCTTTT
CGGGCCACAGACAGCCGGCCACCGTCCCGACCAGAGGACAGGTGTCTGCC
TGGCTCAGAAGGCCTCAGCCTCAGCAGCAGTGGTCGCCATCTGGGTTCCG
GGACTCCACCAAACTTAGGAAATTAGTCTAAACAGGTGAGAGTCTGCACC
ACAGAAGCAGACAGATTCTGGGACCTGCCAAAGCAACACAGCTTCTGGGA
AAGGTCCTGTTTTGGGCCTTCTTCTTCGGCCAGAAGGAGGTCCAACACAA
GATATCTGCACACCTTCCCTGTAAGAGAGCTTGCCAGCAGAGTGCTCTGA
GCACTGAAACTCATAGGAGAGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAAAGAGAGCATAAAATTTC
TTTTAAAATTATTTATTAATTAATTTTATGTGTATACATGTAGGTGCATT
TGCTTGCCCGAGTTTATGTGCATCGTGTGCATGTAGTGGCTGAAGAGGTC
GGAAGAGGGCATCAGAATCCCTGAAACTAGAGTTACCAATCTTCGTGATT
TGCCAAAGGGGAACTGGAACTGAACACCAGTCTTCTGCAACATCACCAGT
ATTTTTAACCATTGTGCCAACCCTTCAACACTTTTCCTCTTTAATTGAGA
AAAAACAAAACCAATCTTTTCTACCAACTACCCCACCTACTCACCCACTC
ACCCACCCACCCACCTACCTACCCACCCACCCACCCACCCACCAACCAAC
CAACCAACCAACCAACCAACCAACCAACCAACCTACTCACCCACTCACCC
ACCCACCCACCTACCCACCCACCCATCCACCCAGCCACCAACCAACCAAT
CAATCAACCAACCAATAAAAAAAACAANCTACCTCACCTCCTACCCACCT
ACCTACCGACCAAATTAACCACTCCTCCATACTGACTGATCATTATTTTA
TCTATCAATCTACCCTACTATCTAATCTTTAATCATCTTCCTTCCTGTCT
AGAAGTAAAGTGAAGTTTATTATTGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_f10.b1 MSMg01no235_f10.b1 CHROMAT_FILE:
MSMg01no235_f10.b1 PHD_FILE: MSMg01no235_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:38 2005
         (572 letters)



>mm_chr10_100273370_100274341
          Length = 972

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattagtttgactcactctttcatgcatacagtctacaattttttgatttagtt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggaattcattagtttgattcactctttcatgcatacagtctacaattttttgatttagtt 357

                                                                       
Query: 64  tagataaatataatatagcgcaaatgtatccaggaactattctacaacagatacaatgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tagataaatataatatagcgcaaatgtatccaggaactattctacaacagatacaatgct 297

                                                                       
Query: 124 attcctctgatatttatttgaacatttattttttatttatttgtgggcacacgtacatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 attcctctgatatttatttgaacatttattttttatttatttgtgggcacacgtacatgt 237

                                                                       
Query: 184 gccatggcatgtaagcacaagtctgaagacgctcaggagcagctggcgcaaccttggttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gccatggcatgtaagcacaagtctgaagacgctcaggagcagctggcgcaaccttggttc 177

                                                                       
Query: 244 cgggcctccgccgaacttaggaaattagtctgaacaggtgagagggtgcaccacagaacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cgggcctccgccgaacttaggaaattagtctgaacaggtgagagggtgcaccacagaacc 117

                                                                       
Query: 304 ggacagcttctggaacaggggagccacagagccactaaggcagcacccttttcgggccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ggacagcttctggaacaggggagccacagagccactaaggcagcacccttttcgggccac 57

                                                                   
Query: 364 agacagccggccaccgtcccgaccagaggacaggtgtctgcctggctcagaaggcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  agacagccggccaccgtcccgaccagaggacaggtgtctgcctggctcagaaggcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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