BAC Information

Click to search

BAC

Clone NameMSMg01-236F13
Chromosome10 (Build37)
Map Location 51,913,560 - 51,914,208
singlet/doubletsinglet
Overlap geneRos1
Upstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2
Downstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236F13.T7 (MSMg01no236_f13.b1)MSMg01-236F13.TJ (MSMg01no236_f13.g1)
ACCAG401630AG401631
length739738
length of high quality
(start - end)
654 (45 - 698)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no236_f13.b1 PHD_FILE: MSMg01no236_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:53 2005CHROMAT_FILE: MSMg01no236_f13.g1 PHD_FILE: MSMg01no236_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCAGGTTTGCCTAATCAGTTTTGACATGAACATTTTTCTTTCTTA
TTGTTGTCCTTTTTGTCTGTATTGTATGATATTGCCTCACTTGTATGATA
GTGACTTGGGTGTGCTTACTTGTATATTTTATATTCCTAAATTAAGTTGA
AAAACCAAAGGCTGTACCAGGAAGACATGCCTTGTTCCTATCTAAGGGTT
AAATAACATGATAGATTAGGTGTGCCATTTTGTACCCTTATTATAAAGTA
ACAAAGTGTCTAACACCGTACTCATCCTTAAGCTAACATATTGGAGGTAG
AGGTCTCTGGCAGATTAGAAAAAGGTGTTACACACATCCGTTTTAAGTAA
AGCAGTAGATTGTTGCTTGGGCAAACTGTAGATGGTAGCAATTTAGAAAG
AGTTTACAAAGGTCTTAGCCAAGATCTCACTGCTTTGGATGCAGACAGGT
TTGCTTTGCGTTTTTGTAGTTATGTTACAAACTTGCAAATAGAAGCAAGT
ATTGTGAGAGAAGCTGAGGCAAGGGGGCAGGAATGTCATGCCAGCCTAGC
CTATAGGAGCTGTATGAGAATAGGCTCTTCTACCCTAAAAAAGACCTCTT
CATTCACTTCCGGAGAAGTCAATGGATACACACACACACACACACACACA
CACACACATACACATACACACACACACATACACACACAT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGCTTGAAGATAGAACCAAGA
GCTATCAAATGATGTCCTCTGGGTGCCACATAGCTATTGGACTCATGAAC
AACTAAGGATACCTTCATTCAGTCCACACAAGAATGTGCCCTTCAACAGG
CACATATGGAGGAGGAACTCAGGGGGCCCTAACCCTCACTGTTGAACTAT
TGGCTTCTATAGATTTGGGGAGAGAAAGAACATTGCCTTTAGTTGTGGAG
CCACTCGTGACCCCACTTGGCTTCAATACATAGCTCCAATCCAATGATCA
CACCAATGGTCCTGTTTAATGTACCCCACCCACTGAACAAACCCAGAAGC
CATGAACCGAAGAAAGTGACTGGTATAAATGAATGAGGATTGACAGGGAT
GTGAGAGAAATACATAAAGGAGGAATCGGAGTGCATTGCATACATGTATT
AACATTAAAACGCTGCCTGCTGTGAACCCACTCAGGATAAGGTAAACTAC
AAAAATCTCTATTTTATATCTGAATTGAGTAATTAATCAGTTCTGACCCC
CATATAACGTGTAGGGAAATACTGGCCATACTGTGATCTTATTCTAACGG
TGATCTTATTCCAATTCCATCTCAACTAAAGCAAGTGGCAGCAACACTGT
CACAACTATAGAATGACCACTTAGTGTCATGAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_f13.b1 MSMg01no236_f13.b1 CHROMAT_FILE:
MSMg01no236_f13.b1 PHD_FILE: MSMg01no236_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:53 2005
         (654 letters)



>mm_chr10_51913377_51914429
          Length = 1053

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%), Gaps = 1/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaggtttgcctaatcagttttgacatgaacatttttctttcttattgttgtc 64
           |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 832 gaattcctcagg-ttgactaatcagttttgacatgaacatttttctttcttattgtggtc 774

                                                                       
Query: 65  ctttttgtctgtattgtatgatattgcctcacttgtatgatagtgacttgggtgtgctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctttttgtctgtattgtatgatattgcctcacttgtatgatagtgacttgggtgtgctta 714

                                                                       
Query: 125 cttgtatattttatattcctaaattaagttgaaaaaccaaaggctgtaccaggaagacat 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cttgtatattttatgttcctaaattaagttgaaaaaccaaaggctgtaccaggaagacat 654

                                                                       
Query: 185 gccttgttcctatctaagggttaaataacatgatagattaggtgtgccattttgtaccct 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 653 gccttgttcctatctaagggttaaataacatgatagattaggtatgccattttgtaccct 594

                                                                       
Query: 245 tattataaagtaacaaagtgtctaacaccgtactcatccttaagctaacatattggaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tattataaagtaacaaagtgtctaacaccgtactcatccttaagctaacatattggaggt 534

                                                                       
Query: 305 agaggtctctggcagattagaaaaaggtgttacacacatccgttttaagtaaagcagtag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agaggtctctggcagattagaaaaaggtgttacacacatccgttttaagtaaagcagtag 474

                                                                       
Query: 365 attgttgcttgggcaaactgtagatggtagcaatttagaaagagtttacaaaggtcttag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 attgttgcttgggcaaactgtagatggtagcaatttagaaagagtttacaaaggtcttag 414

                                                                       
Query: 425 ccaagatctcactgctttggatgcagacaggtttgctttgcgtttttgtagttatgttac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccaagatctcactgctttggatgcagacaggtttgctttgcgtttttgtagttatgttac 354

                                                                       
Query: 485 aaacttgcaaatagaagcaagtattgtgagagaagctgaggcaagggggcaggaatgtca 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 353 aaacttgcaaatagaagcaagtattgtgagagaagctgaggcaggggggcaggaatgtca 294

                                                                       
Query: 545 tgccagcctagcctataggagctgtatgagaataggctcttctaccctaaaaaagacctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgccagcctagcctataggagctgtatgagaataggctcttctaccctaaaaaagacctc 234

                                                             
Query: 605 ttcattcacttccggagaagtcaatggatacacacacacacacacacaca 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttcattcacttccggagaagtcaatggatacacacacacacacacacaca 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space:   671692
Effective search space used:   671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)