BAC Information

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BAC

Clone NameMSMg01-237B08
Chromosome10 (Build37)
Map Location 113,418,536 - 113,418,823
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237B08.T7 (MSMg01no237_b08.b1)MSMg01-237B08.TJ (MSMg01no237_b08.g1)
ACCAG402142AG402143
length774773
length of high quality
(start - end)
191 (177 - 367)288 (123 - 410)
definitionCHROMAT_FILE: MSMg01no237_b08.b1 PHD_FILE: MSMg01no237_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:48 2005CHROMAT_FILE: MSMg01no237_b08.g1 PHD_FILE: MSMg01no237_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTCCCCNNTTCTATTGGGNNNNCCCNCCCNNCCAGCCCCNNCCCCAC
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATTGGATGAGGTGGGGTGGAGCTA
GATGAAGTCAGTCAGCATTAGTCCCAAGAGTTGTTGTTTAGCCCTTGCCC
TAGGTAGAAGCTAGTTGTAGTAAGAGAAGCTGTTGTAAGGGGAGTTGTTG
TAAGAAAAGCAGCAAGGAGAACAAGTAAAGAAGCTGTTGCGTGAACCCGA
CTTGGTGTCCCTGTCGTTCATGTCTCTGTGGGTTGGAGACTGTGGAGGAC
AGTGACAAATTACCTAATTTTTTTTAGTACCAGTTGTTGTGGCTATACTC
AGGATCTTTATTTTGTTTCCCACCCCCCCGACCAATTAAGCATTTGTTCT
TTCCCTCCATATGATGTGCACAACATTTAATAGATGATGTTAGCATGGAC
AATATATCTCCAAGATGTCCAGTTTAGGTTTTGCTTAAGAAAGAAAACTT
TAGTGTTATATTAAAATAAACAATATACTCAGAAAACACCTTATGAAAGG
TTCTTAGTAGAGGGCAAGTGAATGCACACTGAGTAGGTCAAGATACTGAT
TTATATCTTATATCTATTAAATGATCCGCAACCTTCAGAGTTGTGTACCC
AGCAGTCCTTTTTTCTTAACTTAAGCCCCCTGGTCCTTTCTAAGATTTAA
TTCTCTTCTTTATAGGATTCTTGG
TTTTTTTTTTTTTTTTTTTTTTCTGTTCAAATACCGATTTTTNGGTTTTA
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTTGATTTGCCAACATTGTTTCCATTCTATAGAAAAATATTTTA
ATAACTAAGCAAATGTTATATCCCCTTATTGTGTATTTGAAGAATTTCAA
AATTATTAGGCTATGCTATGTATTATATATAGATAGATATTATATCCTCT
GGAACTGGAGTTATGAGCCACGCAATATAGGTGCAGTTCTTCTAAAACAT
CAAAAAGTGCTCTTAACCACTAAGCCATCTCTCCTTCCACACATCCTGCT
TTTTCTTTAAGGACAATAGACTGTTCTTCAGTTGCAAAGAGTTAAGTTAT
CAAAATTTTGTTTATTATAAAGTCATCCACCCGCAAAACTGTCCTTAAAA
CACAATTACATGGAGGATTTTTTTAAAATGCAATTTCTAAGTTAAGTTTT
AATATGCTTTATTTTTAAGGCATAGTTTACCCTGACTGTATTTTTGTAAT
ATAATATCTATATAGTAATTTTATGCAGAGAATTATTTAAATATACAATA
CAGAGAAAGTATCTAATCACCTAGAAATACCCTTCCATATTCAGTGTAAA
CAACTTTAGCTAAGATTCTAGTGTAATCACATGAACACAAATGTTTAGCT
AATTAGTAATTATAGCATAATTTATCACCATGATCCTGATGAAAGAGGTA
TAATCAAAGATATTTTTCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_b08.g1 MSMg01no237_b08.g1 CHROMAT_FILE:
MSMg01no237_b08.g1 PHD_FILE: MSMg01no237_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:48 2005
         (288 letters)



>mm_chr10_113418336_113419023
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 283/290 (97%), Gaps = 4/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttccattctatagaaaaatattttaataactaagcaaatgttatatcc--ccttatt 58
           |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||
Sbjct: 201 tgtttccattctatagaaaaatattttaataactaagcaaatgttata-ccgacct-att 258

                                                                       
Query: 59  gtgtatttgaagaatttcaaaattattaggctatgctatgtattatatatagatagatat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 259 gtgtatttgaagaatttcaaaattattaggctatgctatgtattatatatatatagatat 318

                                                                       
Query: 119 tatatcctctggaactggagttatgagccacgcaatataggtgcagttcttctaaaacat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatatcctctggaactggagttatgagccacgcaatataggtgcagttcttctaaaacat 378

                                                                       
Query: 179 caaaaagtgctcttaaccactaagccatctctccttccacacatcctgctttttctttaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaaaagtgctcttaaccactaagccatctctccttccacacatcctgctttttctttaa 438

                                                             
Query: 239 ggacaatagactgttcttcagttgcaaagagttaagttatcaaaattttg 288
           |||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 439 ggacaatagactgggcttcagttgcaaagagttaagttatcaaaattttg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)