BAC Information

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BAC

Clone NameMSMg01-262P17
Chromosome10 (Build37)
Map Location 92,698,816 - 92,839,414
singlet/doubletdoublet
Overlap genePctk2, Elk3, LOC100041854
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314
Downstream geneLta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262P17.T7 (MSMg01no262_p17.b1)MSMg01-262P17.TJ (MSMg01no262_p17.g1)
ACCAG404930AG404931
length751752
length of high quality
(start - end)		636 (39 - 674)335 (78 - 412)
definitionCHROMAT_FILE: MSMg01no262_p17.b1 PHD_FILE: MSMg01no262_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:46 2005CHROMAT_FILE: MSMg01no262_p17.g1 PHD_FILE: MSMg01no262_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,698,816 - 92,699,447)(92,839,080 - 92,839,414)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GAACTACTCCTTCCCAAAATACAAGCCACAACCTCTAATTAATCATGCAC
CCAGGTATTTTTCTTCTTAAGTGAGAAGGGCCAGACTCTCGTGACTCAGT
ACCCTCATTTGATGTTCAAGTTCATTCAATTTATCCCTTCCTTTGACATA
ATAATTTTATAAATCAATGGCCAAGAATCACCAAAGCATGTAAATAGAAT
TGAGCTGTAAAGGGAATATAGAATACATATATTAGAATTCCAAGGCTTAT
GTAGGTAGATCCACAAAGGTGAAGACAGCACTCCTGCCTAGGAGTTATAT
TGTCTATGTCATTGGTCTTTTAGCCATATTGCTGAAGTGTTTTTGAACTT
AATACTTTATAGTAGCCATTGCTTAGCAGGTTGTTTTGTATAATCTTCTT
GATGGCTTATCCATTTTGAACGCCATTGATATATTTTGGGGTCACTGTCT
CAATTTTTTAACCTACATGCTGGGACGGTGATATTTTGGTGTGTCTGCCT
TCATTGACACACTGAATATTTGTACCCTATTTAAACTTTCTTTATAATAG
AGGGTACTTTGGGGATAGAATGCTAACTTCAAAATTTCTATAGCATTAGT
AATTTTTCTTGAATATTAAAATTGTGAATGGCAGTCTATTCATGATTTGT
TCTCAAGCAAATAGCACGATGAGCTTTTTAGGGATAAACAGATTTGGCTC
T

NCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCGATCTCTGTTTTTATCAT
CACACCCTTGAAGTTACTCTATTCGTTGGGGAATGTTGACTCCGATTTTG
GTGGAGGGAGGGGTCCTTTCTGGAGTTGGGTTTCCTGTCCCTCCAGGCTC
TCTACTTCCTTCCTGGAGCTGCAAACAGATCCTTCCTTTGTCTTGTGGGA
CGTGTCCTGCCCACCTCTGTGGAGAGGATGAAACCCTATTTGTCATATTA
GACAGTGCTGCCTTTCCAAGAGAAGCTGTGAACATTCTCTCTACGCATCA
AGCCTTTCTTTGTATCCTCCTTTATAGATGAGAAAACAGAGTTGTTCACC
CAAGTGATGCTGTTGCGAGCCCACCCGCAGGTCAGTCTAAATCCCAGCTC
CCTTTGCTCAGCTTCTGTGCTCTGTTTTCCACCGAGATGGAGGTCTTGCC
CGTGTAGGGAGCCCCGAATAATGAATTTTATATTCCCCGGGGGTTGGTGT
CTCTTTTTAATAAATTTTTTTCCAAAGACGAATCCCCTTTCGGAATACCC
TCCCCCCCTTCTGTTGGCGATTTGTTTCCTCCCCCTCCCCTCCTAGATGT
AGTGGTATTTTATTAAAATGGCTGTGGGTATTTTTCTTTATTCCTCCTTT
CCCCTGCCTGCGCCCTCCCCTCTCGTTTTTGGTGCTCTCCTCTTCGCGCT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_p17.b1 MSMg01no262_p17.b1 CHROMAT_FILE:
MSMg01no262_p17.b1 PHD_FILE: MSMg01no262_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
         (636 letters)



>mm_chr10_92698612_92699647
          Length = 1036

 Score = 1199 bits (620), Expect = 0.0
 Identities = 629/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaactactccttcccaaaatacaagccacaacctctaattaatcatgcaccc 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaactacaacttcccaaaatacaagccacaacctctaattaatcatgcaccc 264

                                                                       
Query: 65  aggtatttttcttcttaagtgagaagggccagactctcgtgactcagtaccctcatttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtatttttcttcttaagtgagaagggccagactctcgtgactcagtaccctcatttga 324

                                                                       
Query: 125 tgttcaagttcattcaatttatcccttcctttgacataataattttataaatcaatggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttcaagttcattcaatttatcccttcctttgacataataattttataaatcaatggcc 384

                                                                       
Query: 185 aagaatcaccaaagcatgtaaatagaattgagctgtaaagggaatatagaatacatatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaatcaccaaagcatgtaaatagaattgagctgtaaagggaatatagaatacatatat 444

                                                                       
Query: 245 tagaattccaaggcttatgtaggtagatccacaaaggtgaagacagcactcctgcctagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaattccaaggcttatgtaggtagatccacaaaggtgaagacagcactcctgcctagg 504

                                                                       
Query: 305 agttatattgtctatgtcattggtcttttagccatattgctgaagtgtttttgaacttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agttatattgtctatgtcattggtcttttagccatattgctgaagtgtttttgaacttaa 564

                                                                       
Query: 365 tactttatagtagccattgcttagcaggttgttttgtataatcttcttgatggcttatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactttatagtagccattgcttagcaggttgttttgtataatcttcttgatggcttatcc 624

                                                                       
Query: 425 attttgaacgccattgatatattttggggtcactgtctcaattttttaacctacatgctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttgaacgccattgatatattttggggtcactgtctcaattttttaacctacatgctg 684

                                                                       
Query: 485 ggacggtgatattttggtgtgtctgccttcattgacacactgaatatttgtaccctattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggacggtgatattttggtgtgtctgccttcattgacacactgaatatttgtaccctattt 744

                                                                       
Query: 545 aaactttctttataatagagggtactttggggatagaatgctaacttcaaaatttctata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaactttctttataatagagggtactttggggatagaatgctaacttcaaaatttctata 804

                                           
Query: 605 gcattagtaatttttcttgaatattaaaattg 636
           | ||||||||||||||||||||||||||||||
Sbjct: 805 gtattagtaatttttcttgaatattaaaattg 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_p17.g1 MSMg01no262_p17.g1 CHROMAT_FILE:
MSMg01no262_p17.g1 PHD_FILE: MSMg01no262_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:46 2005
         (335 letters)



>mm_chr10_92838880_92839614
          Length = 735

 Score =  648 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtccgatctctgtttttatcatcacacccttgaagttactctattcgttggggaatgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtccgatctctgtttttatcatcacacccttgaagttactctattcgttggggaatgtt 476

                                                                       
Query: 61  gactccgattttggtggagggaggggtcctttctggagttgggtttcctgtccctccagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gactccgattttggtggagggaggggtcctttctggagttgggtttcctgtccctccagg 416

                                                                       
Query: 121 ctctctacttccttcctggagctgcaaacagatccttcctttgtcttgtgggacgtgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctctctacttccttcctggagctgcaaacagatccttcctttgtcttgtgggacgtgtcc 356

                                                                       
Query: 181 tgcccacctctgtggagaggatgaaaccctatttgtcatattagacagtgctgcctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcccacctctgtggagaggatgaaaccctatttgtcatattagacagtgctgcctttcc 296

                                                                       
Query: 241 aagagaagctgtgaacattctctctacgcatcaagcctttctttgtatcctcctttatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagagaagctgtgaacattctctctacgcatcaagcctttctttgtatcctcctttatag 236

                                              
Query: 301 atgagaaaacagagttgttcacccaagtgatgctg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 atgagaaaacagagttgttcacccaagtgatgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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