BAC Information

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BAC

Clone NameMSMg01-263L02
Chromosome10 (Build37)
Map Location 32,146,008 - 32,146,447
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneTpd52l1, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L02.T7 (MSMg01no263_l02.b1)MSMg01-263L02.TJ (MSMg01no263_l02.g1)
ACCAG405445AG405446
length758773
length of high quality
(start - end)
292 (71 - 362)438 (77 - 514)
definitionCHROMAT_FILE: MSMg01no263_l02.b1 PHD_FILE: MSMg01no263_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:41 2005CHROMAT_FILE: MSMg01no263_l02.g1 PHD_FILE: MSMg01no263_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCTCAAAAGAATATCATGAATGGCTACTACACTTCTTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTCCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCC
TCCTCCTCTTCCTCCTCCTCCTTCTTCTTCTTATGTTTTATTTTGTTTGT
TTTTGTTTTGTTTTTGATTTTTGAGACAGGTTTTCTCTGTGTAGCCCTTG
CTGTCCTGGAACTCTCTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATC
CACTTCCCCCTGTCTCCAGATTGCTGCCACTAAAAGTGTGTGCCACCATG
CCCGGCGACTACTACACTTCTTTAAGGAGTGCTCAGGACCAATAGTCATC
AGGAAATGTCAATTGAAATTATTAATTCAGACATTATAGCTACCATCAAG
AAATCACGTGACAACAAATACTGGGAGGAGGTGGAGAAAAAGGAAGACTT
ATTACTGCCTCTGGGATGTTTTCTGGTCCAGCTACTATGGAAATCAGTGT
GAAGAATCCTCAGAAATGATACAAATGGATTTTAATGTGACACACTTACT
CAACTCCTTGTTATATATCAAAGGGATTCTATATCATACTACAGAGATAT
GTGTACAGCCATGTACATTGGTAAGAAAGCCTAATTCAGATTTTCAAAAC
TAATACTG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCATTATCTTAATAAAATAGC
TTCTGAATTTTAGGCTGTTTCACTGTATCAACTTTAAGAGATCAAAGTTC
AAACTACTTTGAAATTTAATATATTTTATAAGATGATATATGTTAGAAGT
TCAGATTGAGGTTCTTTAAGCAAGTTTGCTACAAAGTAGTATTGGAAAGC
ACAAGAGGCGATCTTTATATTCTCGAATAACTAAGGTCATGACAATTTAA
AAATTCTAAAGTATAAGTATGAATGTAATTCACAGTGGTGATAATAACAA
CAAATATAATAAAATATGAGCTATCTACATTAATTGCAAAAAATTTGAAT
GAAATTATAAAAAAATGAACCAAACATTGGTTCTAAAGGAACTGTAGACA
TTCATAAATTAAGAAATAATTTTCTTTATATTGGCACATTTATATCTATG
CATGTTTTAACTTGTATAAATTATGTATATATACACATTTATATAATTAT
AAAACATATAATCTGGCCAGGCGGTGGGGGCACACGCCTTTAATTCTCGA
TACTACGGTAGGCTAAAGCTTAATATTTTCTGGACTCCCACCCCACCTGT
GGTATACTTAGCTGACTCTTCCGGTAGCATGTGTCCCTCATCGCTTTTAT
ATGTCCTCATGCTCTTTCACCGTTGCTTCATTCTCCTAGTCTTTCTCAAC
AAATTTTTCTATGGCCTTACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l02.g1 MSMg01no263_l02.g1 CHROMAT_FILE:
MSMg01no263_l02.g1 PHD_FILE: MSMg01no263_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:41 2005
         (438 letters)



>mm_chr10_32145808_32146647
          Length = 840

 Score =  789 bits (408), Expect = 0.0
 Identities = 432/440 (98%), Gaps = 2/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccattatcttaataaaatagcttctgaattttaggctgtttcactgtatcaacttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccattatcttaataaaatagcttctgaattttaggctgtttcactgtatcaacttta 260

                                                                       
Query: 61  agagatcaaagttcaaactactttgaaatttaatatattttataagatgatatatgttag 120
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggtcaaagttcaatctactttgaaatttaatatattttataagatgatatatgttag 320

                                                                       
Query: 121 aagttcagattgaggttctttaagcaagtttgctacaaagtagtattggaaagcacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcagattgaggttctttaagcaagtttgctacaaagtagtattggaaagcacaaga 380

                                                                       
Query: 181 ggcgatctttatattctcgaataactaaggtcatgacaatttaaaaattctaaagtataa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagatctttatattctcgaataactaaggtcatgacaatttaaaaattctaaagtataa 440

                                                                       
Query: 241 gtatgaatgtaattcacagtggtgataa-taacaacaaatataataaaatatgagctatc 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 441 gtatgaatgtaattcacagtggtgataaataacaacaaatataataaaatatgagctgtc 500

                                                                       
Query: 300 tacattaattgcaaaaaatttgaatgaaattataaaaaaa-tgaaccaaacattggttct 358
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 cacattaattgcaaaaaatttgaatgaaattataaaaaaaatgaaccaaacattggttct 560

                                                                       
Query: 359 aaaggaactgtagacattcataaattaagaaataattttctttatattggcacatttata 418
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aaaggaactgtagacattcataaattaagaaataattttctctatattggcacatttata 620

                               
Query: 419 tctatgcatgttttaacttg 438
           ||||||||||||||||||||
Sbjct: 621 tctatgcatgttttaacttg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 840
Length adjustment: 9
Effective length of query: 429
Effective length of database: 831
Effective search space:   356499
Effective search space used:   356499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)