BAC Information

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BAC

Clone NameMSMg01-265A08
Chromosome10 (Build37)
Map Location 107,584,011 - 107,584,299
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
Downstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A08.T7 (MSMg01no265_a08.b1)MSMg01-265A08.TJ (MSMg01no265_a08.g1)
ACCAG406403AG406404
length1,019792
length of high quality
(start - end)
---289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no265_a08.b1 PHD_FILE: MSMg01no265_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:22 2005CHROMAT_FILE: MSMg01no265_a08.g1 PHD_FILE: MSMg01no265_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTTTTTTTNNTCCCCCCACTCTTTCTACTATAATTTTATAAATTCT
ACAAATCTGCTATGTACACATATCAACCTAATAATTCAGATTTATATATA
AAATAATTATTAATTGCTTCTTGTTTTTATTTTCCCTTATCAAGTAATTT
ATCTTGTTAATTTTTTATTCAATACACCACCCCCCCAAACTTCCTTTACA
CAATAAAAAGAGTATAATAGATATACTCGAATACCTCCATTTACCTGTTT
ACTGCCTTCCTCGTCCCACACCCCAATATTCAATCTTTTCTTCGTGCCTG
ACCCCGCGCCGAATGTCTCTGTTTTTTTAATTAATCTCCTCACCTCCCTT
TTTCTAACCCTTACACATATACTATAAAAACAAAGATACCAATAACAATC
AAATAATAATATAACCATATCTCTTATAGAATTATATATAAAATAAAAAT
ATNTNNNNCNCCCCGCCCCCCCNNNNNNCCCCCTCCTAATAAATATTTCG
ATGCCGTCCTAAATACGTAACTCCACCTAATAGTTGCCAGCAGAGTAATC
CCGCCGGGAAAAATTTCCACACTTCTCTTGTTATTGCCCACCAAGGGATA
AAAGTTTTTGGGTTTAAATGGCTTTGCCCCCTCCAACCGCTGGGAAAGAA
CAAAACCCCTGGGGTGGTGATACCCCAACCTTTTTTCTCCTTGGTGGCCN
AGGCTTTATCTNCTCCCAAAGGCGGAGAGGTTCCNCTCTTGGGGAGACAA
AGGCACCCCCCCCAACAATAGGGGAGGGAGGTGCGGGGTTTCCACAGAAA
CACTTATCCCCATGGGGGGTTGGGGGATGGGTGTTTAAAAGTGGCCACCC
GGTGTTTACACCGGCCCATAACCCTCCTCTTTTTTGTGGGTAAACACACC
GCGAACAACCTGTTTAATAAATATATTTGTGGGCCCCCACTGGGGGAGTA
AACACTCTTTTCTTTTTCTTTCCCCTCTTTCTCACCTTCTTTTTAAGATG
GGGGGTAATACAATTCTTN
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGACTCAGTAGAGTGTGTGTG
TGCATATGTTTATGTCTATACATGTAACAATAATAATTAAAGATGAGTTC
ATAAATTTGGGAAGGGTGGGGAAAACGTTCTGATTTTTATGTGAGATTTC
GACTTTACACTTGATCCTAGTCAAAAGAAGTAAATACAATTCCTGACTGT
AAGTGTTAATAATTAGTTCGATATTTTTAGCACAGTGTGAGCCAAACAAA
ACAGTCCTGGAGCCAGGACATAATCAATGAGTGAACGATGACCTGACAGA
ATTAAATTCAAACTATTAAATANGTTCCCCCAAGCAANACCCCAAAAAAC
TTAACCTATCTCTTACCCACCTCCCCCAACATCGATATAAGAAAGTCCTT
TCTCCCAAACACCACGTGTGGTGCTGTTCTCTCTTGATTTCACTTCCAAG
GGGGGTTTCACTGGATTTTGTGTTTTACGTCCATTTGTAGGCAGGCTTAA
GACATTCTTCTAACACCCCCACCAATTCCCTCTCGACTTAATGCGTGTAA
TTAAGGTGGGACGCTCCCTGTTTGAAGCCCGCCTTTCCTTCCCCTAAATT
TCCTTTCTCCGGTCCTTTCTCCTGGAATAAAATGGTTCCTCTATGGGTAC
CTGGTAAGCACTTTATCCCTAATCTGATTATGTGTCAAATGGTTATTTTG
ATTCCCAGCAAAGTATGCCTGAGTTTTTATTTCTCTGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a08.g1 MSMg01no265_a08.g1 CHROMAT_FILE:
MSMg01no265_a08.g1 PHD_FILE: MSMg01no265_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:23 2005
         (289 letters)



>mm_chr10_107583811_107584499
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggactcagtagagtgtgtgtgtgcatatgtttatgtctatacatgtaacaataataa 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggactcagtagagcatgtgtgtgcatatgtttatgtctatacatgtaacaataataa 260

                                                                       
Query: 61  ttaaagatgagttcataaatttgggaagggtggggaaaacgttctgatttttatgtgaga 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaagatgagttcataaatttgggaggggtggggaaaacgttctgatttttatgtgaga 320

                                                                       
Query: 121 tttcgactttacacttgatcctagtcaaaagaagtaaatacaattcctgactgtaagtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcgactttacacttgatcctagtcaaaagaagtaaatacaattcctgactgtaagtgt 380

                                                                       
Query: 181 taataattagttcgatatttttagcacagtgtgagccaaacaaaacagtcctggagccag 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 taataattagttcgatatttttagcatagtgtgagccaaacaaaacagtcctggagccag 440

                                                            
Query: 241 gacataatcaatgagtgaacgatgacctgacagaattaaattcaaacta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacataatcaatgagtgaacgatgacctgacagaattaaattcaaacta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)