BAC Information

Click to search

BAC

Clone NameMSMg01-265G01
Chromosome10 (Build37)
Map Location 29,591,235 - 29,591,466
singlet/doubletsinglet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G01.T7 (MSMg01no265_g01.b1)MSMg01-265G01.TJ (MSMg01no265_g01.g1)
ACCAG406656AG406657
length770768
length of high quality
(start - end)
232 (129 - 360)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_g01.b1 PHD_FILE: MSMg01no265_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005CHROMAT_FILE: MSMg01no265_g01.g1 PHD_FILE: MSMg01no265_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTAACATTGTTTTCTAGGATCCTTCAATGAAGAAATAGCTC
CCTCCCCAACCAGTCATGTTTCACCACTAGTAAACAACTAACTCTGGGTA
GTATGTTTTTCCTGTGGATTCTTGTGTTCTGGTCACAAGCAAACATGCTA
TTGAACCCTTCTCACATAACCCTATCTGAAAGTTCCATTTATGTCTTACA
GAGATTGTAACACAAGGAGCTTTAAACAGACATCTCTGAAACTGGAGGGT
GGTCAGGTGAAGAAACAGAACTGGTAAACCCTCAGATTAAAGGAGGCTCC
ATACTGGAAAAATTTTTTATAGATGCCTTCTCACACACAGGAGATGGAAC
TCCCAAAGAGGAGCACCCAACGGACTAAGGACTTTGCAAGATACNATGGA
CCCACTCTGAAAATGGGATAAACAGAAAGTCAGGAGTTCACTGGTACAAT
GAGACACAAAAGGGTAGGCAAAATCGCTAACATTTTTATTTCCTTGTCTT
TAGCTACTTGTTATTTAACAGGTTCTGAGTTCGTTCTGTAGATTTTGATA
GATGCTGAAAGGCATGTATTTATCTCATACTGTTTGCTAATAAAACACTT
ACTGTACCAAAGAAACTTTTAATTCTAAAATCTAAAGTAGAAAGCACATA
GAAAGTACAACATATTAAATACAAAGTTCTTCAGATAAAAAAGATCTGAA
GTGAAGCCCTGTTTCTCTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAACTCAGAACCAGATGAATAAG
TTTGTATATTTCTACTGTGTCAGAATTTACTGGGTAACAACAAAAACAAA
AAAATCATGTCTTGGGCACAGGGAAGATGTTCTCCTCATGCAGCTTCTTG
TGGCTTGAGATAGGCTCTACAGTCATGAGAGTTGGAGAGCTGTCCCTTCC
CTACCCCTTATCAGCTGCAGCACCTGCACCTCAACTAGGCAGAGGAGTAG
AGCTGACCCTGATGGCAAAGGCATGTTTGATCCAGCCACCATTTTTTCCT
TGTGACTCAAATGACTTTTTATTCTAAGCACCCCCCTCCCTATGTTAGTG
CAATGAAAAACCTGGGACACCTCTCTTACCTGAATAAAAATCTTAGGCTA
AGGCGATCTTTCTCAATGTTGAGATAGTCTGTTATCATGAGAGAACTTGA
GAGATAAAAATAAATTCCCCACTTTACCTGTTTCAGTGAAGTTGCTCTCA
AATGTGTGTGTGTCTTTTTGTGACTATTGTGAAATATATGACCATGTTAT
AGACTTTGCATGCACACGAGTATGCATGCCCATACTAAGGCAAAAAAAGC
CCTGGTCTATCACTCTTCTTTTTTGCTTACTGAAGTGAGTTCATTCCCAG
CTTTTTAAATGAAGTTAGAGATGTGAGCTCAAAGCCCTCAGGCCTGGGCA
GCTTGTATTCCTTGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g01.b1 MSMg01no265_g01.b1 CHROMAT_FILE:
MSMg01no265_g01.b1 PHD_FILE: MSMg01no265_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:50 2005
         (232 letters)



>mm_chr10_29591035_29591666
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaacaactaactctgggtagtatgtttttcctgtggattcttgtgttctggtcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaacaactaactctgggtagtatgtttttcctgtggattcttgtgttctggtcacaa 260

                                                                       
Query: 61  gcaaacatgctattgaacccttctcacataaccctatctgaaagttccatttatgtctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacatgctattgaacccttctcacataaccctatctgaaagttccatttatgtctta 320

                                                                       
Query: 121 cagagattgtaacacaaggagctttaaacagacatctctgaaactggagggtggtcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagattgtaacacaaggagctttaaacagacatctctgaaactggagggtggtcaggt 380

                                                               
Query: 181 gaagaaacagaactggtaaaccctcagattaaaggaggctccatactggaaa 232
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaaacagaactgggaaaccctcagattaaaggaggctccatactggaaa 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)