BAC Information

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BAC

Clone NameMSMg01-265O03
Chromosome10 (Build37)
Map Location 44,743,544 - 44,743,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
Downstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O03.T7 (MSMg01no265_o03.b1)MSMg01-265O03.TJ (MSMg01no265_o03.g1)
ACCAG407017AG407018
length754731
length of high quality
(start - end)
189 (107 - 295)88 (77 - 164)
definitionCHROMAT_FILE: MSMg01no265_o03.b1 PHD_FILE: MSMg01no265_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:31 2005CHROMAT_FILE: MSMg01no265_o03.g1 PHD_FILE: MSMg01no265_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTTGCAGAGGATCCGCGGAATTCAGGACCTTTCCCCACAAAGTG
AGCCCTTTACCACTGAGCCCAAAACCACCAGCCCTTCCTGTTTTTGGCTT
CTTAGTTCTTCTGCATCTGCAAAATCACTAAAATGCATGAAAAGAGACAA
AATAGCTGGTAGCAGCGCCAAAGATGGAGGCGCAGTGGGGCAGATTCTCA
GAGAGGATGAACAACCATGAAATAGAAATGCTGTTGTTTTTATTTCTCTT
CTGTTTTTACAGAATTAGCGGAAATGGAAACCCTTTGTGGATGGTTTATT
ACCCATGATGATTCTATCATGTTTTAGCTCAGATTTTAGTCAGTTTGCCC
CCCCCCCCCAGCATGTTAGCATGTTTCTTAGCATCCGCCCCGCTCTGCAA
AAAAAAAAACATCTGGATCTACCACTGTGGAATTTTCTCCAGGCATGTTT
TCTTTCCCAGATTTGAACATGTGTAAAGTGAAGAGACTTTTATCATTCCA
TGAACTGACAAATTTAAGACATTGAAGGCCCAGGAGTGGGTCATACACTG
AATGTTGGCACATAAATCATTCAAAAGGATCCTGATAGGATCCATGCCCA
GTACCACCAACAATGATGTTAACTTGTCCTGGATTCTGAGTTGCTCTGCC
CGTACCTACATATAGCATCTCCCTCGGATGACATAGATAGCCACTTGCTA
ATATCCCTTCCTGGTGCCTGACCCTTCTTTGGTTTGATTTTCCCTAAAAT
CGTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCATCCTTATTTACAGCTTAT
GTGATTCTATACATTAAGGATCCTAAAGACTCGACCAGAGATCACCTGCA
TCTGGATAAACACCATNTTAAGGCCAAAAAAAGAAAAAAGNCCAGAGGGG
GGGTTTTTTAATAAGTTAAATAAAAAAAGCACACACAAAAATCTTATAGC
CTTCCCTAAATTCCAAATGGACAAAACCATACCCTACCAAAATTCTGGGG
AAAAACAAGGGTTTTTATTTCAAAAAAAATCCCTTTTAAAAAACATCCTT
TGGGGAATTAAACTTAACCCAAGGAAAGGGAAAAAAGTGGGGTTTTGGGA
AAAATTTTTAAAACCCCCCCCCCCCCCTGAAATCTCACAAAAAATTTTTT
TTTTTTTTTNAAACCCCCCCCCCCCCCCCCTTTTTCTTAAAATATATTTA
ATAAGTTTTTTTTCCCAAAAATACCCCCCCCTTTTTGGGGGGGAAAAAAA
ACAAAATTGGGGGGTAAAGGGGGGCCTCCCTTTGGGGGGGGCCCCTTTTA
AAAAATTTTTTTTCACACCCCTGGGGGAAAAATAAAGAGGGGGGAACATA
AAAAAGAAAGGGGGGGGGGCTTCTTTTAGGGTGAAAAAAAAAGTTTTTCT
CTTTTGTATAAAAAAAATTTTTTTTATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o03.b1 MSMg01no265_o03.b1 CHROMAT_FILE:
MSMg01no265_o03.b1 PHD_FILE: MSMg01no265_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:31 2005
         (189 letters)



>mm_chr10_44743344_44743932
          Length = 589

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgcatctgcaaaatcactaaaatgcatgaaaagagacaaaatagctggtagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctgcatctgcaaaatcactaaaatgcatgaaaagagacaaaatagctggtagcagc 260

                                                                       
Query: 61  gccaaagatggaggcgcagtggggcagattctcagagaggatgaacaaccatgaaataga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaagatggaagcgcagtggggcagattctcagagaggatgaacaaccatgaaataga 320

                                                                       
Query: 121 aatgctgttgtttttatttctcttctgtttttacagaattagcggaaatggaaacccttt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aatgctgttgtttttatttctcttctgtttttacagaattagctgaaatggaaacccttt 380

               
Query: 181 gtgg 184
           ||||
Sbjct: 381 gtgg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)