BAC Information

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BAC

Clone NameMSMg01-265O08
Chromosome10 (Build37)
Map Location 53,813,251 - 53,813,562
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O08.T7 (MSMg01no265_o08.b1)MSMg01-265O08.TJ (MSMg01no265_o08.g1)
ACCAG407027AG407028
length810827
length of high quality
(start - end)
316 (96 - 411)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no265_o08.b1 PHD_FILE: MSMg01no265_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:32 2005CHROMAT_FILE: MSMg01no265_o08.g1 PHD_FILE: MSMg01no265_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAAATTTTTTGATACTGAAGGCTATTCAAAAAAGGGAANNNNNNNCTTTT
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATCTGCCTGCCTAACACTGCTGCCATAAAAGAAAATACCATA
CTTTAGAAGAGCCATATAAACCTTACAAGTTTGTAGTGAATGGACTGCCT
CATCACTGTGTGTCATCTGTTGCAAACTTGTCTACAAGTCTTCTACTTCT
GAATAAAAGCTGTATATGTCTACAGTATAGAATATGTTTTACTATATATA
GTAGGTAGATGATACTGTAGTTAATTTAACATGTCTGTCTCACCATTCAT
ATTTGCTTACAAATGTTCAGTATATTAGAGTGTTTTTTAACTATAGCTAT
TAAGCCACACATTTTTTTTCTATCCCCCACCCGCCTCGCATTACTATCAA
CGTGTACCTTTGACTGCACCCGCTCCTATTTGTCCTCAACTTCCCAGTCC
TTGTTCTCTGCTCAAACTTTTAAAGTTTTCTTTTCATATATAATTTTCAG
TCACACATCCCTTTCCTTGTATATATCTCCTTTTGTTTAGGATAATGTCT
TTCAGGTTTGTCCATGATTTTACACATACAAAGATCTCCTTTTGTAAGGA
CCAAATACTATTTGCTTTTCAACTACATCAACATTTCTCCCATTATCTCT
GTTGGCAGAACCACGAGTTTGTCCTTTTATGCCAGCTTAATAATCAATGA
AGGTTATATCGAACCACCAGGAAGTTATAAATCCTCCTCTGAAATACTGG
ACTCAACCCC
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTCCCTAACTGGGCTTCCACC
TCGTCTGGCCTCAGTGGGAGAGGATGTGCCTAGTCTTGCAGTGAGTTGAT
GTGCCGGGTGGGAGGGATAGCAAGGGGAGGCTCACCCACTCAGAGAAGTG
GATAGGGATGAGGGGAGGGATTCTGTGTGTGGGATGAACAGTGAACTAAT
AAATGAAACAAATAAAATAAAACACCCTTCTCCCCTAGTATCCACCAACT
GTCGAAAGTCCTTCAGCTGGTATTTGTTTGCTTGTGAGCCCCTCCCATTC
ATAATGGAATGCCTTTTTCTTGTTTCTCCCCCCCCCCCCCCCCCTCTTTT
GTGAAAATTTTTGTAATTTTTTCCCCCCCCCCCTAGAAAAAAAAAAAAAA
TATTTTGTCGTGTGCGATTTTTGCCCCTATAGTTGAAAATTATTCTAGTT
ACCTATTCTTTTTTTCTTTTTTGACATTATCTTAGTCTAATTTAAACGTT
TTTGGATTCCAATCGTAACTAAATGGTATTTTTTCTATCTCACTCGCTTT
GTTTTTCTTTTTTTTTTTTCTTCCCTGTTCCTTTTTGTTGTTTTTTTTTT
ATTCTTTCCATAATTATTATTTATCTTCATACCCTTCGTCTCCCCCTTTT
CTATTATCTTACTTATTCTCTTCTAGTCACCTATTCATCTTCTTATTCTT
GATGATTTTTTTTTTGTTACTTTTTTCTTTTTAACACCCATACTATACAT
CACTGCATTATTTCTGTTATCATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o08.b1 MSMg01no265_o08.b1 CHROMAT_FILE:
MSMg01no265_o08.b1 PHD_FILE: MSMg01no265_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:32 2005
         (316 letters)



>mm_chr10_53813047_53813762
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcatctgcctgcctaacactgctgccataaaagaaaataccatactttagaag 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 516 gaattcttcatctgcctgcctaacactgcttccataaaagaaaataccatactttagaag 457

                                                                       
Query: 65  agccatataaaccttacaagtttgtagtgaatggactgcctcatcactgtgtgtcatctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agccatataaaccttacaagtttgtagtgaatggactgcctcatcactgtgtgtcatctg 397

                                                                       
Query: 125 ttgcaaacttgtctacaagtcttctacttctgaataaaagctgtatatgtctacagtata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttgcaaacttgtctacaagtcttctacttctgaataaaagctgtatatgtctacagtata 337

                                                                       
Query: 185 gaatatgttttactatatatagtaggtagatgatactgtagttaatttaacatgtctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaatatgttttactatatatagtaggtagatgatactgtagttaatttaacatgtctgtc 277

                                                                       
Query: 245 tcaccattcatatttgcttacaaatgttcagtatattagagtgttttttaactatagcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcaccattcatatttgcttacaaatgttcagtatattagagtgttttttaactatagcta 217

                       
Query: 305 ttaagccacaca 316
           ||||||||||||
Sbjct: 216 ttaagccacaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)