Query= MSMg01no265_o12.b1 MSMg01no265_o12.b1 CHROMAT_FILE:
MSMg01no265_o12.b1 PHD_FILE: MSMg01no265_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:33 2005
(318 letters)
>mm_chr10_99236173_99236890
Length = 718
Score = 598 bits (309), Expect = e-175
Identities = 312/313 (99%)
Strand = Plus / Minus
Query: 4 ggaattcacttacaagaatcctgaaccccccaaattaattaaccaagtctcagaatcatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcacttacaagaatcctgaaccccccaaattaattaaccaagtctcagaatcatt 457
Query: 64 caatgaaccagatgttcttgaagagaatcccatggtactgacaggtggaaggttctcgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caatgaaccagatgttcttgaagagaatcccatggtactgacaggtggaaggttctcgct 397
Query: 124 gttgggagaggcatttgggagtgctgggcactctgactagagaagcgttatttttttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gttgggagaggcatttgggagtgctgggcactctgactagagaagcgttatttttttctt 337
Query: 184 agtgctggaggacaggcttgatttctgctcgatcttctgacgtgattgctgacatcatcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtgctggaggacaggcttgatttctgctcgatcttctgacgtgattgctgacatcatcc 277
Query: 244 tgccattctcaatgaactctgcttttgaaaggaatttatgtgcttattccaacggaacaa 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 276 tgccattctcaatgaactctgcttttgaaaggaagttatgtgcttattccaacggaacaa 217
Query: 304 ctggaaggcagct 316
|||||||||||||
Sbjct: 216 ctggaaggcagct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no265_o12.g1 MSMg01no265_o12.g1 CHROMAT_FILE:
MSMg01no265_o12.g1 PHD_FILE: MSMg01no265_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:33 2005
(291 letters)
>mm_chr10_99068350_99069040
Length = 691
Score = 528 bits (273), Expect = e-154
Identities = 276/277 (99%)
Strand = Plus / Plus
Query: 1 aatgttccagcttaaaatgttagaaaaggtccagagattcaagttcaaaaccacaccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgttccagcttaaaatgttagaaaaggtccagagattcaagttcaaaaccacaccttt 260
Query: 61 ccaggctggggagatgactaaggataaagtacttagcacatgcatgaggacatgaatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggctggggagatgactaaggataaagtacttagcacatgcatgaggacatgaatctg 320
Query: 121 caagtcacagaaacagccaggtttcgtttaatctgagaacccctggctagcgaaagtcct 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 caagtcacagaaacagccaggtttcgtttaatctgagaaccccaggctagcgaaagtcct 380
Query: 181 ttgtcatcactgtcaacagcaacagtttacaataacaataaaaaatgagagccagagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtcatcactgtcaacagcaacagtttacaataacaataaaaaatgagagccagagaaa 440
Query: 241 aataacatatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacatatatatatatatatatatatatatatata 477
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 478 atatatatatatatatatatatatatatata 448
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 480 atatatatatatatatatatatatatatata 450
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 482 atatatatatatatatatatatatatatata 452
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 484 atatatatatatatatatatatatatatata 454
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 486 atatatatatatatatatatatatatatata 456
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 488 atatatatatatatatatatatatatatata 458
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 490 atatatatatatatatatatatatatatata 460
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 492 atatatatatatatatatatatatatatata 462
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatata 277
|||||||||||||||||||||||||||||||
Sbjct: 494 atatatatatatatatatatatatatatata 464
Score = 58.7 bits (30), Expect = 4e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 247 atatatatatatatatatatatatatatat 276
||||||||||||||||||||||||||||||
Sbjct: 476 atatatatatatatatatatatatatatat 447
Score = 58.7 bits (30), Expect = 4e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 248 tatatatatatatatatatatatatatata 277
||||||||||||||||||||||||||||||
Sbjct: 495 tatatatatatatatatatatatatatata 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 12
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
