BAC Information

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BAC

Clone NameMSMg01-266F24
Chromosome10 (Build37)
Map Location 6,793,083 - 6,793,377
singlet/doubletsinglet
Overlap geneIyd
Upstream geneGm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
Downstream genePpp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266F24.T7 (MSMg01no266_f24.b1)MSMg01-266F24.TJ (MSMg01no266_f24.g1)
ACCAG407380AG407381
length753781
length of high quality
(start - end)
295 (75 - 369)105 (75 - 179)
definitionCHROMAT_FILE: MSMg01no266_f24.b1 PHD_FILE: MSMg01no266_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:09 2005CHROMAT_FILE: MSMg01no266_f24.g1 PHD_FILE: MSMg01no266_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCCAAGGTAGTTTACGACTGAGGTGTGAGAAAAACTCTTCCTGGAGC
CTGATCACCAGCATAGTGACTCATTGCGCTGGGCTGGCCATGCCCAAAGC
TCCTGGCCTTCCTCCTGGCTCAGGCTCCAAGGTGGGCAGGTGACTGGGGA
AACATGGGTTGGAGGGGAAACAGCTAGGGACCTAGAGGGCACTCTCTGTC
TGTATAGATGCATCTTGTCTGCTTCCCCCACAAGTGTCGCCATGCCTCGA
TTTGTATTGCTTTAATATGAGTTCTGGTAGGTTGGGCTCATCCTTATGCT
TACCAGGCATGTACCTTACTGATGGCACCACCTCCCTAGGTATTGTATGA
TTTTTATGGATGATGACCCCCCCCCCCCTCACAAAAAAAAAAAATTTTTT
GGTTTGGGGGCGCCTACTTTAGCCCCACGCCCTATTTTTTCCTTTTTTCT
CCTCTCTTCTTTTTCCCCCCCCCCCCCTTCTTCCTTCTTTCTCTTCCCCT
CCCCCACCTTATTTTTCCTTCCCCCCTCCCTTTTCTATCCCTCCTTCCCC
CTTTTAATCTTTTTTTTCCCTATCTCCCCCATTTTATTTTACCCCCCCCC
CCCCCTTTATTTACCTTTCTCTCCCTTTCTTTTCCTCTTCTTCATCCCCC
GCAGTTTTACCTCCCACCCTTTTCCCCCTCTTCTCTATTATATTACATTC
CAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGCTATGGTGCTGAAATGAGGGAG
TGGACGAGACTACTTTACCCATGGGAACTTTACATTAATTCTGATCTTCA
GTTCTACAGCCAGTGACTTACAACTGGATGGATTNNTCCTGCCCCCCCCC
CCCATTCAAAATTCATTTGACAAGTCATTTGCAATGAAGCTTCAGCTGCA
GGGGACTGTCAAGGTTGGGAATAAGTGTTCCCTAAAGACCTGATGTTNAA
GGCTTAATCCCAGCCTTTTAAAAGCCTTTCATANATGNNGCATAAAACGA
AATCTAAAGAACTNTGTTCTTATCGAAGCCCCGGACGNNCTCGTCCATCA
CGGTNTTGTGTAGTTACCCCCCTTATTTTGTTCAGGTGGGAAGCTGGGGG
GCCGCCCGCGAACTGAAAAAATTTGGAAACCCATTTGGGGCGCTTTCTGG
GAATTANTGGTCCAAAATTGTAAAACCCCGAAAACCCCTGCCCCCTTGAA
AGAATTTTTTGTTTCTTTTNNNNNNCTCCATAATCGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCNNCTCCCNCCCCCCCNNNCCCNNCCNCCCCCCCCCCCCCNCCCCC
CCCCCCCCCCNCCCCCCCCNNNNCNCNCNNCCCCCCCCTCCCNCTTTTTC
CCCCCCTTCTCTTTTCTTTTTGTTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_f24.b1 MSMg01no266_f24.b1 CHROMAT_FILE:
MSMg01no266_f24.b1 PHD_FILE: MSMg01no266_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:09 2005
         (295 letters)



>mm_chr10_6792883_6793577
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgtgagaaaaactcttcctggagcctgatcaccagcatagtgactcattgcgctgggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 495 ggtgtgagaaaaactcttcctggagcctgatcaccagcatagtgactcattgggctgggc 436

                                                                       
Query: 61  tggccatgcccaaagctcctggccttcctcctggctcaggctccaaggtgggcaggtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggccatgcccaaagctcctggccttcctcctggctcaggctccaaggtgggcaggtgac 376

                                                                       
Query: 121 tggggaaacatgggttggaggggaaacagctagggacctagagggcactctctgtctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tggggaaacatgggttggaggggaaacagctagggacctagagggcactctctgtctgta 316

                                                                       
Query: 181 tagatgcatcttgtctgcttcccccacaagtgtcgccatgcctcgatttgtattgcttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagatgcatcttgtctgcttcccccacaagtgtcgccatgcctcgatttgtattgcttta 256

                                                                  
Query: 241 atatgagttctggtaggttgggctcatccttatgcttaccaggcatgtaccttac 295
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atatgagttctgggaggttgggctcatccttatgcttaccaggcatgtaccttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)