BAC Information

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BAC

Clone NameMSMg01-266J17
Chromosome10 (Build37)
Map Location 27,663,787 - 27,880,811
singlet/doubletdoublet
Overlap geneLOC100040401, Ptprk
Upstream geneLama2, LOC100040385, LOC100040961
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266J17.T7 (MSMg01no266_j17.b1)MSMg01-266J17.TJ (MSMg01no266_j17.g1)
ACCAG407546AG407547
length756756
length of high quality
(start - end)		319 (45 - 363)281 (84 - 364)
definitionCHROMAT_FILE: MSMg01no266_j17.b1 PHD_FILE: MSMg01no266_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:26 2005CHROMAT_FILE: MSMg01no266_j17.g1 PHD_FILE: MSMg01no266_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,663,787 - 27,664,101)(27,880,531 - 27,880,811)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTATAGCATGTAAATAAAACTATTCGCAATCTTTCTAATTTTTT
TACAAACACAAAACAAACAAACAACAAAAGAAAAATTAGTTGTCTTTGTT
ATTATTACTTTTGAGACAGAATTTCTCCTATAGCCAAGGCTAGCCTCAAA
ATCCTGTTCCTCGTGACCCAACCGCCTGAAGGCTGGGCTTACAAATTCCA
CTCCACACCAGATTTAAGAATGGAATGTATAAGTATCATTTTGTGTATGT
GTATTGAGAGGGTTTTCGATACCAGTTGTTTGACAGGCATCGTGAGACAT
ACAGAGAATCTGATTTTTTCTTAACGCCCCACCAGTTCAAGGCTTTCCTG
GGCTATAGAACAAATTCACCCCCCACCCTGGCTTACAGATTAGAACTGTC
TAAAAAGACAAAAGAAGAAAAGTGGGGATGGAACCAGTTAAAGTATCTAA
GAGAGTAGAAACACATAGCATTTGAAATCCTTGAGCCAATTGATTCTCAG
GTGAATGACCATGAAATGATCTTTTAAAAGATGTATAATTAAAATAATTC
ATACGTGCCTATGTGTGTATGTGTATGCATGCATACTTATTTGTGCTTAA
GATGAAGTGAAGTGGCTTATAGGCTAAAAAGCTTGCCTGAGTTCAGATCT
TCAGGAACCCCCATAGTAAGTCATATAGACTATTTTTGCCTCTCGTCTTG
TATCCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAAAGGCCAGTCCTC
CATCAAAGGTCAGTCCTCTATCACTTACCTTGTGTCGACTTGAGACAACC
TAAAGGAAGGGTTAATTTACAGAAGACAGAAAGTCCTGTATTTCTTTGTT
CCTTGAAAATAACAAATGTATTATATTTAAAAGGGGTGGGGGTAGGGAGA
GCCAGCTGATTTACTTAGTGTCTTTTAAGAAGCAATAAATACAAAGTTTA
GGTATATATCTATAAACCGGGGGTGGTTAAGCGGGAAGTGTTCCATATGA
AACATAGGCTGATTGTTTATTTTACCCCCCGACGCCCCCAAAAGAAGAAT
GCATGACCCTAAAGAGGCATCCCACCAGAGAATCTTGAAATGCTATTGCG
AAGAGACAACAGTCCTCAGTAACATTGAGACCACATACAGTGTGTCCCAC
ATCTGAAACCTTCAGAGATCACAGACTGGCATCATAGGGACCAAGAGAGC
GATCTCAGAGCTCTGGAGAGGCAGAGCCAGCATTTGTGGAAGAAGCGTTG
GCTAGGAGAAATACTCGGTCTCTGTCTCGGAGGGCTACGCACCAGACTAG
AAACAGATAGAAACCACTTATGCCGGTGCTTACCTGGTTTGCGATGGATT
GTTTCTTAATAAACTACATACTACAGGCCAGTGTTATGTGTTCTTGACAC
ATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_j17.b1 MSMg01no266_j17.b1 CHROMAT_FILE:
MSMg01no266_j17.b1 PHD_FILE: MSMg01no266_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:26 2005
         (319 letters)



>mm_chr10_27663583_27664301
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtatagcatgtaaataaaactattcgcaatctttctaatttttttacaaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtatagcatgtaaataaaactattcgcaatctttctaatttttttacaaaca 264

                                                                       
Query: 65  caaaacaaacaaacaacaaaagaaaaattagttgtctttgttattattacttttgagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaacaaacaaacaacaaaagaaaaattagttgtctttgttattattacttttgagaca 324

                                                                       
Query: 125 gaatttctcctatagccaaggctagcctcaaaatcctgttcctcgtgacccaaccgcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatttctcctatagccaaggctagcctcaaaatcctgttcctcgtgacccaaccgcctg 384

                                                                       
Query: 185 aaggctgggcttacaaattccactccacaccagatttaagaatggaatgtataagtatca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 aaggctgggcttacaaattccactccacaccagatttaagaatggaatgtataagtttca 444

                                                                       
Query: 245 ttttgtgtatgtgtattgagagggttttcgataccagttgtttgacaggcatcgtgagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgtgtatgtgtattgagagggttttcgataccagttgtttgacaggcatcgtgagac 504

                          
Query: 305 atacagagaatctga 319
           |||||||||||||||
Sbjct: 505 atacagagaatctga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_j17.g1 MSMg01no266_j17.g1 CHROMAT_FILE:
MSMg01no266_j17.g1 PHD_FILE: MSMg01no266_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:26 2005
         (281 letters)



>mm_chr10_27880331_27881011
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaaggccagtcctccatcaaaggtcagtcctctatcacttaccttgtgtcgacttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 accaaaggccagtcctccatcaaaggtcagtcctctatcacttaccttgtgtcgacttga 422

                                                                       
Query: 61  gacaacctaaaggaagggttaatttacagaagacagaaagtcctgtatttctttgttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacaacctaaaggaagggttaatttacagaagacagaaagtcctgtatttctttgttcct 362

                                                                       
Query: 121 tgaaaataacaaatgtattatatttaaaaggggtgggggtagggagagccagctgattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaaaataacaaatgtattatatttaaaaggggtgggggtagggagagccagctgattta 302

                                                                       
Query: 181 cttagtgtcttttaagaagcaataaatacaaagtttaggtatatatctataaaccggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttagtgtcttttaagaagcaataaatacaaagtttaggtatatatctataaaccggggg 242

                                                    
Query: 241 tggttaagcgggaagtgttccatatgaaacataggctgatt 281
           |||  ||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggggaagcgggaagtgttccatatgaaacataggctgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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