BAC Information

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BAC

Clone NameMSMg01-267M24
Chromosome10 (Build37)
Map Location 16,406,152 - 16,406,469
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267M24.T7 (MSMg01no267_m24.b1)MSMg01-267M24.TJ (MSMg01no267_m24.g1)
ACCAG408429AG408430
length748739
length of high quality
(start - end)
323 (45 - 367)342 (388 - 729)
definitionCHROMAT_FILE: MSMg01no267_m24.b1 PHD_FILE: MSMg01no267_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:57 2005CHROMAT_FILE: MSMg01no267_m24.g1 PHD_FILE: MSMg01no267_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAAAGAAAGTACTGTGTATTTACAGTATAGGTCATTGAAAGTCAA
CAGGGTCTATTTTCATCCTCTTTTACATGTTTAAATTTATTTTTATTTTA
AAACTAGGCTTTCACATGAATACGACACATCCTCTGCTCATTCCCCCTTT
CCGTATCTCCTACCTTTACCTTTTTTGCACATTTCCTTGCATCACCCCAA
TTTGTCCTACAAATAAATACTCTTTCATTGTTCACTTCCATTTACGACTC
CTAGATGGAAGTTTCAGCATGAAGAGGTATGAAGTTTTAGATTGAGAATT
TAAGTAACATGTGGTGTTTTTTATGTTGCCCACCCCCATTGAATAAAATG
ATGCATCCAGTACCTAGCGTATCTCCATGGTGAAGAACAAAACATGTCCC
AGTGAAACAGGGGACACAATCTGACAGTGGAACCATCAGAGATTGGCGAA
GGTGCTGGGAAGGCAGATGGGTACACAAGAGTCAACAGACAGACCTCATG
GATCAGAGCAGAATGTATGAGCAGCCTCATGAGAAACAAGCTCAAAGTCT
GATTACCCTATTTGAACTCATAAGGTATTTTTTTAGAGTTCTGTTTATTT
TAAAAATGAAAGCTTTCCAAACATGGGCTGCTGCCACCTTTAGGGATTAA
AATATTCATCACAGAGAGAGGATAGAACAGCTCTGAATGAAATCAACA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCTGCATAACTGGAATGAAACATA
CTTGGTCAGGATGGATGATTGTTTTCGATGTGTTATTGAGGATTTTTGCA
TCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTC
TTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATATAATGAATTGG
GTAGAGTACTTTCTGTTTCTATTTTGTTGAATAGTTTGTGAAGAACTGTG
ATTAGATGTTCTTTGAAGGTCTGATATAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTTTGGTTGGCACACCACCCCCCGACTGATTCTATTT
CTTCAGGAGATATGGGACTATTTAGATCGTTAACTTGATCCTGATTTAAC
TTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCGTCCAGGTTTTC
CAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGA
TTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTAATTTTGTTA
ATTAGGATGCTGTCCCTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATC
TATCTTGTTGATTTTCTCAAAGGATCTGCTCCTCGTTTGGTTGATTCTTT
GAATAGTTCTACTTGTTTCTACTTGGTTGATTTTGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_m24.b1 MSMg01no267_m24.b1 CHROMAT_FILE:
MSMg01no267_m24.b1 PHD_FILE: MSMg01no267_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:57 2005
         (323 letters)



>mm_chr10_16405843_16406565
          Length = 723

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaagaaagtactgtgtatttacagtataggtcattgaaagtcaacagggtct 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcacaaagaaagtagtgtgtatttacagtataggtcattgaaagtcaacagggtct 568

                                                                       
Query: 65  attttcatcctcttttacatgtttaaatttatttttattttaaaactaggctttcacatg 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attttcatcctcttttaaatgtttaaatttatttttattttaaaactaggctttcacatg 508

                                                                       
Query: 125 aatacgacacatcctctgctcattccccctttccgtatctcctacctttaccttttttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aatacgacacatcctctgctcattccccctttccgtatctcctacctttaccttttttgc 448

                                                                       
Query: 185 acatttccttgcatcaccccaatttgtcctacaaataaatactctttcattgttcacttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acatttccttgcatcaccccaatttgtcctacaaataaatactctttcattgttcacttc 388

                                                                       
Query: 245 catttacgactcctagatggaagtttcagcatgaagaggtatgaagttttagattgagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catttacgactcctagatggaagtttcagcatgaagaggtatgaagttttagattgagaa 328

                             
Query: 305 tttaagtaacatgtggtg 322
           ||||||||||||||||||
Sbjct: 327 tttaagtaacatgtggtg 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)