BAC Information

Click to search

BAC

Clone NameMSMg01-268P09
Chromosome10 (Build37)
Map Location 60,063,955 - 60,064,184
singlet/doubletsinglet
Overlap geneCdh23
Upstream geneLOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, 4632428N05Rik
Downstream geneSlc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268P09.T7 (MSMg01no268_p09.b1)MSMg01-268P09.TJ (MSMg01no268_p09.g1)
ACCAG409224AG409225
length724732
length of high quality
(start - end)
231 (127 - 357)232 (129 - 360)
definitionCHROMAT_FILE: MSMg01no268_p09.b1 PHD_FILE: MSMg01no268_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:19 2005CHROMAT_FILE: MSMg01no268_p09.g1 PHD_FILE: MSMg01no268_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAATTCTCGGAAAGGGTGAGCTTGAAATTCAGCAGTCTCCGG
GGCTGTAAACATTCTATGTCTCCCTAAGATTGTACAGAGGCTAGAAGCTT
CCAAGACTAGGCCTAGGTTAGCAGACAGAGGCAGTAAACCTCTGAGACAA
CAATTACATTAGGCCAATGAAAGGTACTTTTATAGCTATGCCTTGTAGGT
CACCCTGGCTTGTATTAAAGCAAACCAGAGGGCAACTTTACTCCACGGCT
TCTGTCTCAGTTCCTGTCTTCTTGAGTTCCCTAACTCCTGAGTTTCTACC
ACCGAGTGACCTAGNCCTGCAAGNCCCAGNCCCTTCCTGGTGTCTGCTTT
AATTCTTGCTTCCAGCTTCCTAAAATCAGTAAAGGCTCTGTGGAGTTCTA
AGATGAAATTAACCCTTTCCGTCCCAAGTCAGTTTTACTCCGGGGTTTCA
TCACAGCAAAGGACACAGGGAGACAAGGAGAACCGCCCAGGCTACCTTCT
TGTTTGCTGTGTTTTTTCTGATCCTGAGGTAACCTTTGCCTCCTCTGTGC
CCTGTAGGGAGTGTGCCCAGGGCCTGGAGCATGCTAGCTTCTGCTCTCCC
ACAGAGCCGCATTCCAGACCTCACGTGTTCCCCTTGCAGTTGAGGCTGGT
ATTTAGGCCATGTTTTGAGATTTA
CCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTCACTTTGTCTCTCGAAT
GCTTAAGAGTGGATCTGCTTTTCTCCAGGTTTACTCCACATTAAACTTAT
TGAGACGTCATCCCATGGCCTTGGATGGTGCCTGCACTATTTTCTGTTCC
CACCAGCAGTGGCTAAAACTGGAGTTCTTGTTCGTGGTAGGGCATCCAGG
GATTCACAGGTCCTGGAGGTTCTGATGACGGTGTGAAAGGGGCTGGGAAG
ATGATCACAGCAGCTTCAGTTGTATTCTGTGTCTCCCTCGGTGCAGCACA
CACCCCAGCCTATGNCTCCATTTCCCACCCCCCACCGTTCTTTGCCAGAG
TCAGCCCATGCCACACATAGACCAGAAAAAACAAAAAAAAGATTGATACC
CCTGGTGTTGCGACTCAGTGACGGGCCATGGACGGTGACAAAGATAAATG
CTGTGGTCTCAGTGTGCCCTCTAAAGCTTGTGAGTTAGAAACTACCCCTG
TCTCCTAATTGCTGCCACTGGGGGATGAGGCCTTCAGGAAGCAGTCAGAA
ACCAGACGGTGTGAGGCCCGTGCAAAGGCACTAACGGCTTCACAAGAAGT
TGATAGCCCTGAGCTAGCACTTCTGTCTCTCTCACCACATTCATCATCGT
GATATGATGCCGGGGTGAAGACCCTCACCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_p09.g1 MSMg01no268_p09.g1 CHROMAT_FILE:
MSMg01no268_p09.g1 PHD_FILE: MSMg01no268_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:19 2005
         (232 letters)



>mm_chr10_60063754_60064384
          Length = 631

 Score =  416 bits (215), Expect = e-121
 Identities = 227/231 (98%), Gaps = 1/231 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tttactccacattaaacttattgagacgtcatcccatggccttggatggtgcctgcacta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttactccacattaaacttattgagacgtcatcccatggccttggatggtgcctgcacta 261

                                                                       
Query: 62  ttttctgttcccaccagcagtggctaaaactggagttcttgttcgtggtagggcatccag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttctgttcccaccagcagtggctaaaactggagttcttgttcgtggtagggcatccag 321

                                                                       
Query: 122 ggattcacaggtcctggaggttctgatgacggtgtgaaaggggctgggaagatgatcaca 181
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 ggattcacagttcctggaggttctgatgatggtgtgaaaggggctgggaagatgatcaca 381

                                                              
Query: 182 gcagcttcagttgtattctgtgtctccctcggtgcagcacacaccccagcc 232
           ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 382 gcagcttcagttg-atactgtgtctccctcggtgcagcacacaccccagcc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 631
Length adjustment: 9
Effective length of query: 223
Effective length of database: 622
Effective search space:   138706
Effective search space used:   138706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)