Query= MSMg01no269_d20.b1 MSMg01no269_d20.b1 CHROMAT_FILE:
MSMg01no269_d20.b1 PHD_FILE: MSMg01no269_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:39 2005
(683 letters)
>mm_chr10_124095247_124096329
Length = 1083
Score = 1120 bits (579), Expect = 0.0
Identities = 661/699 (94%), Gaps = 20/699 (2%)
Strand = Plus / Plus
Query: 5 gaattcatacattgttagtatggagacagaagtaaacagggccaaggaataaaagaatgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattcatacattgttagtatggagacagaagtaaacagggccaaggaataaaagaatgg 244
Query: 65 aaaaagatttgttttctgtagcaaggaaggagagtttggagtttcttccaaagaagttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaaaagatttgttttctgtagcaaggaaggagagtttggagtttcttccaaagaagttcc 304
Query: 125 tctttgaagaatgaagag----------ctgtttcattctgggtccctagagaacaatta 174
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 tctttgaagaatgaagagctgtttcattctgtttcattctgggtccctagagaacaatta 364
Query: 175 agggatagacacattcctgagcatgccccatttaatgtactacttcaagaaggaaatatt 234
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agggatagacaaattcctgagcatgccccatttaatgtactacttcaagaaggaaatatt 424
Query: 235 actcacagtttcttgagcatgttaaatttaaggccatagagtgcactgtgaggaggaagt 294
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 425 cctcacagtttcttgagcatgtttaattcaaggccatagagtgcactgtgaggaggaagt 484
Query: 295 ---gcagca--ga-----agggcatattcaactcataccgtataggtgacagacaggagg 344
|||| | || ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 485 gtggcagaagggaactttagggcatattcaactcataccataaaggtgacagacaggagt 544
Query: 345 tatccaaaaatcttatcttcactgaaaagagaaaatgatatctaaaaggtacatagcata 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatccaaaaatcttatcttcactgaaaagagaaaatgatatctaaaaggtacatagcata 604
Query: 405 gaaactttccctgaaacctcccacttgatctagaggtgcccagttgtgatcacctgaagg 464
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaaactttccctgaatcttcgcacttgatctagaggtgcccagttgtgatcacctgaagg 664
Query: 465 ggtgatctggatacccatgactacttcatacagtctgggtccctctccctcttgccctgc 524
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 665 cgtgatctggatacccgtgactacttcatacagtctgggtccctctccctcttgacctgc 724
Query: 525 tcacattcttatatcagctctttgttaacggacccagatgtttccagttatcctgtcaag 584
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 725 tcacattcttatatcagctctttgttaatggacctggatgtttccagttatcctgtcaag 784
Query: 585 gttactggtgacctgaatattgtgcaatttggttgtcaattctttgtctttatctcactt 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 785 gttactggtgacctgaatattgtgcaatttggttgtctattctttgtctttatctcactt 844
Query: 645 ccccagcaacaattaatacaatcgattattggaagattt 683
|||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ccccagcaacaattaatacaatcgattattggaagattt 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no269_d20.g1 MSMg01no269_d20.g1 CHROMAT_FILE:
MSMg01no269_d20.g1 PHD_FILE: MSMg01no269_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:39 2005
(206 letters)
>mm_chr10_124265592_124266197
Length = 606
Score = 375 bits (194), Expect = e-109
Identities = 203/206 (98%)
Strand = Plus / Minus
Query: 1 caaatacctgtcacagggcagagcaagtgagaagcatttaatataatgagctgtaactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caaatacctgtcacagggcagagcaagtgagaagcatttaatataatgagctgtaactta 296
Query: 61 gctcattataaaagcagcctataaagacaaaagagatgggatataattacaaattatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gctcattataaaagcagcctataaagacaaaagagatgggatataattacaaattatcag 236
Query: 121 catttccatagtatataaggtggtgattttaaaaagtatgcgtgtgtgtgtgtgtgtgtg 180
||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 235 catttccgtagtatataaggtggtgattttaaaaaatatgcgtgtgtgtgtgcgtgtgtg 176
Query: 181 tgtgtgtgtgtgtgtgtgtgtgtgtg 206
||||||||||||||||||||||||||
Sbjct: 175 tgtgtgtgtgtgtgtgtgtgtgtgtg 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
