BAC Information

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BAC

Clone NameMSMg01-270P01
Chromosome10 (Build37)
Map Location 65,226,489 - 65,227,127
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P01.T7 (MSMg01no270_p01.b1)MSMg01-270P01.TJ (MSMg01no270_p01.g1)
ACCAG410634AG410635
length742746
length of high quality
(start - end)
659 (40 - 698)639 (75 - 713)
definitionCHROMAT_FILE: MSMg01no270_p01.b1 PHD_FILE: MSMg01no270_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:43 2005CHROMAT_FILE: MSMg01no270_p01.g1 PHD_FILE: MSMg01no270_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTGCTCTGAGCCCCATTTTTTAATGGTGTTATTTGATTTTATGGA
GTCCACCTTGTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCTATCTGTTGGTGGTCTTTTTGTC
TTATTGACAGTGTCTTTTGCCTTGCAGAAGCTCTGCTCTGCAATTTTATG
AGGTCCCATTTATCGATTCTCCCTGTACCCATATCTTCGAGGCTTTTCCC
TACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCT
TAATCCACTTAGATTTGACCTTAGTACAAGGAGATAAAGCCAGCCTGGTC
TTCAGAGCAAGCTCCAGGACAGCCAGGCCTACACAGAGAAATCTTGTCTC
AGAAAAACACAAAAAAAATCCAAAAAATCCAAACAATCGATATGGCATAT
ATGACCTTAGTCCAAGCGCCCCCATCTAGACATCTCATAACCACATATAA
TTCCACCTCCAGAGGATAGGATTACCTCTTCTGGCTCCCAAGGACAGGTG
TGCACCCCCATGCACCCCACATATACACAAATAAAATACATTGTAAAAAT
AGTTTCTTGTTAGAATCCATTTTGCTAATGGTTTCATTTGGATAATTTGT
TTAACAATATTCTCATCACTACATACAAAGTTTTATATTATT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGAATAGAAGAAACAAGATGTGTG
AATAGAATAATTATGTGTATATACAATCATAAGAAACCAATAAAAATATT
GATTAAATTGGGAAGCTAGTTGCACTGTCTTCACTGTACAAACATCAATT
GCATTTTTATTTGGCATCAATAAGCAAACTAGAGAGGCAGTGTATAAACA
ATTGTGTTTAAAATAGCATCCAAACTGGGTTGCTGGGGAAATAGATTAGG
AGTAAATTCCTTGCTGTTCAAGTATGAAGACATCAGTTCAGATTCCCAGT
ACCTATGTAAACACACTTGTAATCTGTGTATGTATATATAATATATCATT
GGTAATATTATTAATTAAAATTATTATAATCATATAAATATAATATATAA
TTACCATATACATTAACATTAATAATCAAGGTTAGTAGTATTGATAATAT
CAATATATTATATACATTAGAATATATATTTTCAATTAGAATATATTGAG
TATATATTCTATCTACATTATACATAGAACATATGTAAAATATAATATGT
ATATATAATATATTCTAATAAAGAATATATGCATTCTAATATAGAATCTG
TATCTATCTATCTTTAGATAGAGAGAAAGAGAGCATCACAAAATTAGAAA
GTAGGCAAAGAAAAGATTAAAAGATCTCAACATGGGAGGAACAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p01.g1 MSMg01no270_p01.g1 CHROMAT_FILE:
MSMg01no270_p01.g1 PHD_FILE: MSMg01no270_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:43 2005
         (639 letters)



>mm_chr10_65226289_65227327
          Length = 1039

 Score = 1228 bits (635), Expect = 0.0
 Identities = 638/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaatagaagaaacaagatgtgtgaatagaataattatgtgtatatacaatcataaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caagaatagaagaaacaagatgtgtgaatagaataattatgtgtatatataatcataaga 260

                                                                       
Query: 61  aaccaataaaaatattgattaaattgggaagctagttgcactgtcttcactgtacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaataaaaatattgattaaattgggaagctagttgcactgtcttcactgtacaaaca 320

                                                                       
Query: 121 tcaattgcatttttatttggcatcaataagcaaactagagaggcagtgtataaacaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattgcatttttatttggcatcaataagcaaactagagaggcagtgtataaacaattg 380

                                                                       
Query: 181 tgtttaaaatagcatccaaactgggttgctggggaaatagattaggagtaaattccttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttaaaatagcatccaaactgggttgctggggaaatagattaggagtaaattccttgc 440

                                                                       
Query: 241 tgttcaagtatgaagacatcagttcagattcccagtacctatgtaaacacacttgtaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcaagtatgaagacatcagttcagattcccagtacctatgtaaacacacttgtaatc 500

                                                                       
Query: 301 tgtgtatgtatatataatatatcattggtaatattattaattaaaattattataatcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtatgtatatataatatatcattggtaatattattaattaaaattattataatcata 560

                                                                       
Query: 361 taaatataatatataattaccatatacattaacattaataatcaaggttagtagtattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatataatatataattaccatatacattaacattaataatcaaggttagtagtattga 620

                                                                       
Query: 421 taatatcaatatattatatacattagaatatatattttcaattagaatatattgagtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatatcaatatattatatacattagaatatatattttcaattagaatatattgagtata 680

                                                                       
Query: 481 tattctatctacattatacatagaacatatgtaaaatataatatgtatatataatatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattctatctacattatacatagaacatatgtaaaatataatatgtatatataatatatt 740

                                                                       
Query: 541 ctaataaagaatatatgcattctaatatagaatctgtatctatctatctttagatagaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaataaagaatatatgcattctaatatagaatctgtatctatctatctttagatagaga 800

                                                  
Query: 601 gaaagagagcatcacaaaattagaaagtaggcaaagaaa 639
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaagagagcatcacaaaattagaaagtaggcaaagaaa 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)