BAC Information

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BAC

Clone NameMSMg01-271I12
Chromosome10 (Build37)
Map Location 113,726,915 - 113,727,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I12.T7 (MSMg01no271_i12.b1)MSMg01-271I12.TJ (MSMg01no271_i12.g1)
ACCAG411058AG411059
length745740
length of high quality
(start - end)
368 (378 - 745)643 (71 - 713)
definitionCHROMAT_FILE: MSMg01no271_i12.b1 PHD_FILE: MSMg01no271_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:25 2005CHROMAT_FILE: MSMg01no271_i12.g1 PHD_FILE: MSMg01no271_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTAAGGAAATACAGAAACTAATCAAGAACAGACAAGGAAATATGTCA
CCACTAGAGCCCAGCTATTCTATAGCAGAAGGCCCTTAAAATTCCAACAT
AGCTATAACACAAGAAAAAGACCTTAAAACCAGCTATATGAAGAAATGAA
TGAGTTCTTTAAAGAAATCCTGGAAAACACAAACAACTGGGGGAAATGAC
TAAATCCCTTAAGGAGAGGCAAGAAAATATAAAGAAATTGTGTAAAGAAA
AAATAAAATTAAAAATAGAAAAACAAGCAAAAAAAACTGGGAAATTTGGA
AAATATTTTTTTAGCACCCCCGCCCCGGAACTAGCAAGGCAAGCTTCACC
AACAGAATATAAGATGTAAGAAAGAACATCAGGCCTTATAAGTACACATG
TCAAGGAAAATATAAAGTCTAAGAAACTACTGACATGAAACATCCAGAAA
ATCTGTGACAGAATGAAAAGATCAAACCTAAAATAATAGGTACAGATGGA
AGAACAATAATATGAACTAACCAGTACCCCCAGAACTCGCTGGGACTAAA
CCACCAATCAAAGAAACCACATTGTGGGACTCATGGCTCTAGCTGCATAT
GTAGCAGAAGATGGCCTAGTAGGTCATCAATGGGAGGAGAGGCTCTAGGT
CCTGTGAAGGTTCTATACCCCAGTATAGGGGAATACCAGAGCCAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCACAGTTCTTGAAATGACAATTCTCATC
TTCATATGGAAAAACAAGAGACTCAGAGTAGCTACAACAATCCTGAACAA
TAAAAGAACTTCTAGAGGTATCCCATCTCTGACTTCAAGCTGTACTACAG
AGCAATAGTAATAAAACAGCATGGTATTGGTGTAAAAAACAGACAGGTGG
ATCAATGGAATCTAATAAAAGACCCAGAAATAAACCCACAGACCTACGGA
CACTTGATCCTTGATAAAACAGCCTAAATCATACAATGGAAAATAGAAAG
CATTTTCAACAAAGAGTACTGCTCTAACTGGATGTCTAGGTGTAGAAGAA
TACAATTAGATCCATACTCATCACCTTGCACAAAGCTGAAGTCCAAGTGG
ACCAACAACATCAACATAAAACCAGACATAATCTAATAGAATAGAAAGTG
GGGAACAGCCTTGAACTCATTTGTGCAGGAGACAACTTTCTGAATACAAC
ACCAATGGCTCAGGCACTAAAGTCAAGAATTAATAAATAGCTTGTCATGG
AACAGAACGGCCTGTGAATTTTCAGAGTTAGGACATATTTAGTGCTGTCA
AAACTCTCATTCCTGAAAATTCCTCTTGTTGAATGAACCTCTAGTTTACC
AAACCCTTTACTGTTGAATGTCTCTCAGATCTACTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i12.g1 MSMg01no271_i12.g1 CHROMAT_FILE:
MSMg01no271_i12.g1 PHD_FILE: MSMg01no271_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:25 2005
         (643 letters)



>mm_chr10_113726182_113727224
          Length = 1043

 Score =  576 bits (298), Expect = e-168
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                        
Query: 334  aattagatccatactcatcaccttgcacaaagctgaagtccaagtggaccaacaacatca 393
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1043 aattagatccatactcatcaccttgcacaaagctgaagtccaagtggatcaacgacatca 984

                                                                        
Query: 394  acataaaaccagacataatctaatagaatagaaagtggggaacagccttgaactcatttg 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  acataaaaccagacataatctaatagaatagaaagtggggaacagccttgaactcatttg 924

                                                                        
Query: 454  tgcaggagacaactttctgaatacaacaccaatggctcaggcactaaagtcaagaattaa 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  tgcaggagacaactttctgaatacaacaccaatggctcaggcactaaagtcaagaattaa 864

                                                                        
Query: 514  taaatagcttgtcatggaacagaacggcctgtgaattttcagagttaggacatatttagt 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  taaatagcttgtcatggaacagaacggcctgtgaattttcagagttaggacatatttagt 804

                                                                        
Query: 574  gctgtcaaaactctcattcctgaaaattcctcttgttgaatgaacctctagtttaccaaa 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 803  gctgtcaaaactctcattcctgaaaattcctcttgttgaatgaacctctagtttaccaac 744

                      
Query: 634  ccctttactg 643
            ||||||||||
Sbjct: 743  ccctttactg 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)