BAC Information

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BAC

Clone NameMSMg01-272J24
Chromosome10 (Build37)
Map Location 71,489,028 - 71,489,386
singlet/doubletsinglet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J24.T7 (MSMg01no272_j24.b1)MSMg01-272J24.TJ (MSMg01no272_j24.g1)
ACCAG411859AG411860
length746750
length of high quality
(start - end)
359 (383 - 741)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no272_j24.b1 PHD_FILE: MSMg01no272_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:49 2005CHROMAT_FILE: MSMg01no272_j24.g1 PHD_FILE: MSMg01no272_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAAGAACTGCGGTACTGAATGATCAGATGCAATGGGGTTAAATGCTAAA
TGTTAAATAAAACATCTGTACCTGGGTGATTGAATCAAAGCCCAAATAAA
ATATTACTATGGAAATCTAAAGTTCCTCTAAAATAGGTACAATTTCTCAA
CTAGATGGATTAAAAAAAACTAATTATTGTTGTTTTCTTTTAAAATTATT
TCCATGCTTGACATCGAAGTCATCTTAATGATTCGGAAGGTGTTTGATGG
TGTGTGTAACGTTTATAGGATTATTTGGTTTTGCATCCTCTTTAATATTA
ACGTGCCGTATGTTTATCCTCTCCGCGCCATGTGGATGCATATCTGCTAA
ATATTTTGAGGACTGAGGCATCCGGAAAGCATCCTTGATACTTCTCCTTT
CTTTTCTGCCCTGGCATGTAATCAATCACTCAAGCTGCAGTGGTACCTCA
TAAATATTCCTTGGGTTCAGCCTTTTATTTCCATTTCCATTTACAATATC
TTTCTACAAGCCACAATTATTTCTCTCCAGATCCACTGGAAGTCTCTAGA
CTAATTGCTGATGCTGTGAAAAATGACCTTCCTGGCAAATGGGCTGTGAT
GGGGAAGCTTAGAACTGAATATAAATCCAGCTTGTAAAACATCTCTGTGA
ACCACAAAATAGATAAAAATTGACCAAATCAGGACATGGGAGAGAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAGCTTCAGTGAAGT
AGCTGGATATAAAATTAAATCAAACAAGTCAATGGCCTTTCTCTACACAA
AGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATA
GTCACAAATATTATAAAATAACTTGGCATGACTCTAAGTAAGGAAGTGAA
AGGGCTGTATGATAAGAACTCCAAGTCTCTGAAGAAAGAAATTAAAGAAG
ATCTCAGAAGATGGAAAGATCTCCCGTGCTCATGGATTGGCAGGATCAAC
ATTGTAAAAATGGTNATCNTGCCCCCCCCCCCCCACAGATTCAATGCAAT
CCCCATCAAAATTCCAACTCAATTCTTCAACAAATTAAAAAGCATAATCT
GCAAATTTATCTGGAATAACAAAAAACCTAGGATAGCAAAAGCTCTTCTC
AAGGATAAAAGTACCTCTGGTGGAATTACCATGCCTGATCTAAAGCTGTA
CTACAGAGCAATTGTTATAAAAACTGCCTGGTACTGGTATAGTGACAGAC
AAGTAGACCAATGAAATAGAATTGAAGACCCAGAAATGAACCCACACACC
TATGGTCACTTGATCTTCGACAAGGGAGTTAAAACCATCCAGTGGCAGAA
TGACAGCATTTTCAACAAATGGTGCTGGCATGACTGGTGGTTATCATGTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j24.b1 MSMg01no272_j24.b1 CHROMAT_FILE:
MSMg01no272_j24.b1 PHD_FILE: MSMg01no272_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:49 2005
         (359 letters)



>mm_chr10_71488828_71489586
          Length = 759

 Score =  648 bits (335), Expect = 0.0
 Identities = 353/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatgcatatctgctaaatattttgaggactgaggcatccggaaagcatccttgatact 60
           ||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 201 tggatacatatctgctaaatattttgaggactgaggcatccagcaggcatccttgatact 260

                                                                       
Query: 61  tctcctttcttttctgccctggcatgtaatcaatcactcaagctgcagtggtacctcata 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcctttcctttctgccctggcatgtaatcaatcactcaagctgcagtggtacctcata 320

                                                                       
Query: 121 aatattccttgggttcagccttttatttccatttccatttacaatatctttctacaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattccttgggttcagccttttatttccatttccatttacaatatctttctacaagcc 380

                                                                       
Query: 181 acaattatttctctccagatccactggaagtctctagactaattgctgatgctgtgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaattatttctctccagatccactggaagtctctagactaattgctgatgctgtgaaaa 440

                                                                       
Query: 241 atgaccttcctggcaaatgggctgtgatggggaagcttagaactgaatataaatccagct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atgaccttcctggcaaatgggctgtgatggggaagcttagaactgaatataactccagct 500

                                                                      
Query: 301 tgtaaaacatctctgtgaaccacaaaatagataaaaattgaccaaatcaggacatggga 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaaaacatctctgtgaaccacaaaatagataaaaattgaccaaatcaggacatggga 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)