BAC Information

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BAC

Clone NameMSMg01-272O05
Chromosome10 (Build37)
Map Location 74,410,756 - 74,586,485
singlet/doubletdoublet
Overlap geneGnaz, LOC100040057, Rab36, Bcr
Upstream genePcdh15, EG630453, EG623346
Downstream geneSpecc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272O05.T7 (MSMg01no272_o05.b1)MSMg01-272O05.TJ (MSMg01no272_o05.g1)
ACCAG412046AG412047
length741830
length of high quality
(start - end)		340 (67 - 406)229 (77 - 305)
definitionCHROMAT_FILE: MSMg01no272_o05.b1 PHD_FILE: MSMg01no272_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:09 2005CHROMAT_FILE: MSMg01no272_o05.g1 PHD_FILE: MSMg01no272_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,586,146 - 74,586,485)(74,410,756 - 74,410,982)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAA
TTCAAAGTTTTGCATGTTTTTGTATGGTCCCCATACAACTACCTATGGGG
ATATGATGGGCAAAAAGACCAGAATCCTCTGAACTAATTGTTGGCGAACC
CAGGAAAAGCTCATCAGGACCCTGGCCTGTTGCCCCGGGCTATGATCTGT
AGTACCCTCTTGCCAAGCCCTTCCAGTAGACACTCTGAAGCAAAAGGCAA
CTTACCCTTTGCATCAACAACTTTATGCAGACATCTAGGACACGTGGTGG
GTTAGCATGACAACCCCAGATAGTGCTAGATACCAGACCAGACATCCAAG
CTGGAAAGCCTTTGATGGTGTCAGCATATGGGTTGCACACATCTTTACCC
CCAGCATTTGCACCCCACACGCAAGTGGGCCAGTCTGTTCTACATAGAAG
TTCCAGGGTAGTCAGGGCTACAAAGCAGACCTTATTACAAAATTTAAGCA
GGGGCTGGGCCTGGCTGCACTTCAAAGCTGCTCGGGTGATGCTGAGAGTG
ACGAACACTTGTGAGAGGCAGAGGATTCTGTGACATCAGCTCTGCACGGA
TGCCTACAGCTTGCAATAGTGCCTATTTTGATACCTAGCATGCCTGCCCA
GGTATAAGATTTATTCACTTCGTTACCTAATCCTCACCCCGTTTATTGTC
ACCTTCTGGATCTACCATCCTCAGATTACCTTCTGTTTTCC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGGGTGACATGTGGCCTGGGC
AGCCAGTTTCCCTACCACCCTCACCCTCAGAAACAGTCTTCCAGATGGTA
GCTCTGGCTTCCATTTCTCCTTGACGTTTCCTGGGGGCAGTTATAGCATA
CAAGAAGCTGTGAGGACGTAAACATCCAGGGAGGGATGTGGTAGAGGGCA
GCTGGTACACTGGGTGGACTCGGAAGCAAGTACAGGATGGGGAGGTTGGA
CCATAGCTCAGAAAAACCAAGTGTTGATTAGTCTCCCAGCTCTAGAGCAA
GAAAGGCATGATTTTTTTTTTTCCCCCCCCCTCCCCCCTTTATTATTGTT
ATATCTCCCTTTTTTTTTTCTCCCCCCCCCCATAAAAATAAAGATATTTA
CCGGTGGTGGCGGCTGTTTTCCCCTTTTTCTTTTATTTCCCCTTTTCTCA
ACTTTCTCACTTCCTTTCCTTTTGCTTCTTTTCTCCCCCTTTTCCTCTTT
TTCTTCCTTTTTTTCCCTTTTCTCTTTTTTCCTCTCCACCTTCCTCTGTT
TTCCCCTTTTCCCCTTCTCTTTTCTTATCTTTTTTCTTCCTCTTTTTTCT
TCTCTCATTCCGATATCTTAAACGTCGCCCTCTATCTCTTCTCTTTCTTC
TATTATACCTCATCACTCCTCCCTTTTTTTACATTTTAACCTCCCCTTTT
TCTCTTCCTCTCCCTCTTATTCACTCCTTCAGCCTCTATTTACTAACTAC
TTGTATTCCCCCGCTCTCTTTCTCTCACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_o05.b1 MSMg01no272_o05.b1 CHROMAT_FILE:
MSMg01no272_o05.b1 PHD_FILE: MSMg01no272_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:09 2005
         (340 letters)



>mm_chr10_74585946_74586685
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttgtatggtccccatacaactacctatggggatatgatgggcaaaaagaccagaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tttttgtatggtccccatacaactacctatggggatatgatgggcaaaaagaccagaatc 481

                                                                       
Query: 61  ctctgaactaattgttggcgaacccaggaaaagctcatcaggaccctggcctgttgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctctgaactaattgttggcgaacccaggaaaagctcatcaggaccctggcctgttgcccc 421

                                                                       
Query: 121 gggctatgatctgtagtaccctcttgccaagcccttccagtagacactctgaagcaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gggctatgatctgtagtaccctcttgccaagcccttccagtagacactctgaagcaaaag 361

                                                                       
Query: 181 gcaacttaccctttgcatcaacaactttatgcagacatctaggacacgtggtgggttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcaacttaccctttgcatcaacaactttatgcagacatctaggacacgtggtgggttagc 301

                                                                       
Query: 241 atgacaaccccagatagtgctagataccagaccagacatccaagctggaaagcctttgat 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgacaaccccagacagtgctagataccagaccagacatccaagctggaaagcctttgat 241

                                                   
Query: 301 ggtgtcagcatatgggttgcacacatctttacccccagca 340
           ||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 240 ggtgtcagcgtatgggttgcacacacctttacccccagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_o05.g1 MSMg01no272_o05.g1 CHROMAT_FILE:
MSMg01no272_o05.g1 PHD_FILE: MSMg01no272_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:09 2005
         (229 letters)



>mm_chr10_74410556_74411184
          Length = 629

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggggtgacatgtggcctgggcagccagtttccctaccaccctcaccctcagaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggggtgacatgtggcctgggcagccagtttccctaccaccctcaccctcagaaacag 260

                                                                       
Query: 61  tcttccagatggtagctctggcttccatttctccttgacgtttcctgggggcagttatag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tcttccagatggtagctctggcttccatttctccttgacgtttcctgggggcagttgtag 320

                                                                       
Query: 121 catacaagaagctgtgaggacgtaaacatccagggagggatgtggtagagggcagctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacaagaagctgtgaggacgtaaacatccagggagggatgtggtagagggcagctggt 380

                                                          
Query: 181 acactgggtggactcggaagcaagtacaggatggggaggttggacca 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactgggtggactcggaagcaagtacaggatggggaggttggacca 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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