BAC Information

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BAC

Clone NameMSMg01-274N03
Chromosome10 (Build37)
Map Location 40,142,423 - 40,142,714
singlet/doubletsinglet
Overlap geneCdc2l6
Upstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, LOC666374
Downstream geneSlc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274N03.T7 (MSMg01no274_n03.b1)MSMg01-274N03.TJ (MSMg01no274_n03.g1)
ACCAG413442AG413443
length737735
length of high quality
(start - end)
322 (41 - 362)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no274_n03.b1 PHD_FILE: MSMg01no274_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:26 2005CHROMAT_FILE: MSMg01no274_n03.g1 PHD_FILE: MSMg01no274_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTATTTATTTCCTGTACTTCACTTTTTAATAAAACTATTGGATTCCCTG
GAGTCTGCACTCTTTTTTTTTCAGATGTATTTATTTATTTTATGTATGTG
AGTACACTGTAGCTGTACAGATAGTTGTGAGCCTTCATGTGGTTGTTGAG
AATTGAATTTAGGACCTCTGCTTGCTCCAGTTGGCCCCGCTCACTCCTGT
CAATTCCATTCACTCAGTCCCTGCTCAATCCAGCCCAAAGATTTATTTAT
TATTATATACAAGTACACTGTATCTGTCTTCAGGCACACCAGAAGAGGGC
GTCAGATCTCATTATTGTTGTTTGCGAGCCACCATGTGGTTGCTGGGATT
TGAACTCAGGACCTTCAGAAGAGCAAAAGAGCAGGGCTGAGCCATCTCAC
CAGCCCTGGAGTCTACCTTCTTGAGTTCTTTGTACATTTTGGATATTAGC
CCTCTGTAGGATGTAGGGTTAGGAAAGATCTTTTCCCAATCTGTAGATTG
CCATTTTTTTTCCTACTGATAGTTTCCTTTGCTTTACAGAAGCTTTTCAA
TTTTATGAGGTCACATTTGTTGATTGTTGCTCTTAAAGCAGATGCCATTG
GTGTTCTATTCAGGAAGTTTTCCCCCGGGTCCAAGTATTCGAGGCTCTTC
CCCACTTTCTCTTCTATTATATTCAGCTTATCTGGTG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGAATTCATTCTGTTAAAAACTAGAATCTTTAATTACA
TGTTAGTTTGGGCTTTTCTGCCCAAATAATTAGGGAAGAATCTGTGAAAT
CTTGAGAATACGCTAATTTTCCTATATATTTTTCTGTTTCTGTATTTTTA
AAATGTTGTTGTTTCTCCTGTTGTAACAAAGCCAAATGATGCAGAGCTTC
TCTGAGCCCTTAGTGACTCTCTAGTCACGGCCTGCCGGCTTCTGTTCCTT
GCCTGTTGAAGGCCACTTTGCTTGGGTTGTATCCTAGCTGTTTGTCCTTC
AGTTAGTTTTTTTTTTATTTACCGCCCACACGTGACGGCTCCCTTGCTGC
AACCAGGGTTTGAGACAGACTTGATGCTGACTGTGCCATTTAAAGTCTCA
ATAGTGAAAACTAACCTTTTGTTGCTTATAAATACCTTCAATAGAATCTG
ATCCATCTAGTAGGAATTCCTCTTAGCGTCTAGGATGCTCTGTTCTTGTT
CTGCTAGGGAGGGCACTTTGCTTCCTATCAGTACCTTCTCCTGTGCGAAG
GAGGCGCCTACTTTTTTCTCTAGAATTTTTAGACAGTGACCTCTTCTTTC
TAGACATCGCCTTTCTCTTGTGTCTCTTTTAAAAACACTTTATCATTTAT
TTTCCTAAAGAGTTCTCGGTTTAATTCTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_n03.g1 MSMg01no274_n03.g1 CHROMAT_FILE:
MSMg01no274_n03.g1 PHD_FILE: MSMg01no274_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:26 2005
         (292 letters)



>mm_chr10_40142223_40142914
          Length = 692

 Score =  499 bits (258), Expect = e-146
 Identities = 284/294 (96%), Gaps = 4/294 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctgttaaaaactagaatctttaattacatgttagtttgggcttttc--tgcccaaa 58
           |||||||||||||||||||||||||||||||||||||||||||||  | |  ||  ||||
Sbjct: 201 cattctgttaaaaactagaatctttaattacatgttagtttgggc--tacagtgagcaaa 258

                                                                       
Query: 59  taattagggaagaatctgtgaaatcttgagaatacgctaattttcctatatatttttctg 118
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 259 taattagggaagagtctgtgaaatcttgagaataagctaattttcctatatatttttctg 318

                                                                       
Query: 119 tttctgtatttttaaaatgttgttgtttctcctgttgtaacaaagccaaatgatgcagag 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttctgtatttttaaaatgttgttgtttctcctgttgtaacaaagccaaatgatgcagag 378

                                                                       
Query: 179 cttctctgagcccttagtgactctctagtcacggcctgccggcttctgttccttgcctgt 238
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 cttctctgagcccttagtgactctctagtcacggcctgctggcttctgttccttgcctgt 438

                                                                 
Query: 239 tgaaggccactttgcttgggttgtatcctagctgtttgtccttcagttagtttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgaaggccactttgcttgggttgtatcctagctgtttgtccttcagttagtttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)