BAC Information

Click to search

BAC

Clone NameMSMg01-276H13
Chromosome10 (Build37)
Map Location 59,631,160 - 59,631,470
singlet/doubletsinglet
Overlap genenone
Upstream geneSept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2
Downstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H13.T7 (MSMg01no276_h13.b1)MSMg01-276H13.TJ (MSMg01no276_h13.g1)
ACCAG414648AG414649
length722751
length of high quality
(start - end)
328 (13 - 340)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no276_h13.b1 PHD_FILE: MSMg01no276_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005CHROMAT_FILE: MSMg01no276_h13.g1 PHD_FILE: MSMg01no276_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATACGGAGAGGATCCGCGGAATTCTTATCGGCAGCGCTCAGG
AGATGAGCAGGGAAAGGCAGGGAGTGGGACACGGGTACAAGTTCACTGCC
CAAACTTGCAGTCAGGTGCCTCATGTGACCTCAGTCAAACTTCCTGTTCC
CTTGGACCCCAAACCAGACACCTGCAGAAAGCCTAAACAGGAAGCTTCTC
TGGAGAAAGAAAACCCCAAAGATGCTATAATAAGAAAGAGGAAGAGAAAA
GCAAAATACAAACCAACCTCCACTCACACCTGGCCTAAAAACCACCAGTC
CAGATCAAAGGAAAATGTGTGTTCCCAACATCCTTTCTCTGGTGTATAGG
ACCACCCCCCATCTCCTCCTAAGGTCGGGGACAAACCTGAAAAAAAAAAG
AAAAAAAAAATGAAAATGGAGGCTGGAGAGTTGACTCAGTGGTAAGAGCA
CTGGCTGCTCTTCCAAAGGACCTGGGTTTAATTGCCAGTACCCACAGGGC
AGCTCACAACTGTCTGCAACTCCAGTTCCAGGAGATCTGACACCCACACC
CATACTTACAAGCAGGTAGAACACAAATGCACATAAAATAAAAATAAATA
AATCTTTTCTAAAAATGAAAATGAAGCCATGATGCTCCTTAAGTGTGATT
GATGGGAAGGTTTAATTGAAAATGTTTAGACAAGCATCAAGCGAAGACTC
TTGAAAAAAACCTGAACTGATT
CGAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACGTACCAGGGGACCATACG
CCTAAGAAAACTAAGGCTTTCTCCCCCGGCAGCTAATGACTGTGAATAGC
TCCTTAGCTTCCTCTGTGCTGGCATGCTCCCTGCCTTCATCTTGTGCAAG
CGACCACAGCTGCTGTGAGCTAACGAGTGCATTAAAGATGCTGTTTGCCT
CTGGTCCCGTCTCTTTAAAGATTTAGCATCTATTTAAAATTTATGTGTAC
AAAAATATTTTGCCTGTATGTAAGTGCACTGTGTATGCAGGGCCTGTGGA
GGCCAGAGAGGTGTTTTTTTTCCCTGCACCCGCCCTCATTGGACACTGTG
AGCCACTGTGTGGGTCTGGGGAACTGAACCTAGAAACCTGCAAGAATAGC
CAGTGCTCTTAACTGCTCAACCATCTTTCCAGCCCCTGAACCTTGGCCCT
TTGAATCTTTCCCCTCTTCTTTTTCTTTTTGTTTTTCTGAACCTTGAGAG
ATTTTTTTTTTAATATGGATGGTCTACTTCTTAAAAGTTCAGAATTTTAA
AAAAATCTCTACTTTGTTTGCCATGATGGAAGGATTAAAAATTTAAATTA
TACTTATATGTACCTTACAGTGAAAAAAGCCTTTGGAAGTGTACATTCTG
TATGTATTCTAATCTAATCCTAGGGCCTGTGACTGTACACACTGTTCAAA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h13.b1 MSMg01no276_h13.b1 CHROMAT_FILE:
MSMg01no276_h13.b1 PHD_FILE: MSMg01no276_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:25 2005
         (328 letters)



>mm_chr10_59630946_59631673
          Length = 728

 Score =  516 bits (267), Expect = e-151
 Identities = 300/311 (96%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattcttatcggcagcgctcaggagatgagcagggaaaggcagggagtgggacacgggt 74
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcttattggcagtgctcaggagatgagcagggaaaggcagggagtgggacacgggt 466

                                                                       
Query: 75  acaagttcactgcccaaacttgcagtcaggtgcctcatgtgacctcagtcaaacttcctg 134
           ||||||||||||   ||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct: 465 acaagttcactgtggaaacttgcagtcaagtgcctcatgtgacctcagtcagacttcatg 406

                                                                       
Query: 135 ttcccttggaccccaaaccagacacctgcagaaagcctaaacaggaagcttctctggaga 194
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtcccttggtccccaaaccagacacctgcagaaagcctaaacaggaagcttctctggaga 346

                                                                       
Query: 195 aagaaaaccccaaagatgctataataagaaagaggaagagaaaagcaaaatacaaaccaa 254
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 345 aagaaaaccccaaagatgctataataagaaagaggaagagaaaagcaaaacacaaaccaa 286

                                                                       
Query: 255 cctccactcacacctggcctaaaaaccaccagtccagatcaaaggaaaatgtgtgttccc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cctccactcacacctggcctaaaaaccaccagtccagatcaaaggaaaatgtgtgttccc 226

                      
Query: 315 aacatcctttc 325
           |||||||||||
Sbjct: 225 aacatcctttc 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)