BAC Information

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BAC

Clone NameMSMg01-276J21
Chromosome10 (Build37)
Map Location 95,557,521 - 95,557,809
singlet/doubletsinglet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
Downstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276J21.T7 (MSMg01no276_j21.b1)MSMg01-276J21.TJ (MSMg01no276_j21.g1)
ACCAG414752AG414753
length753756
length of high quality
(start - end)
319 (46 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no276_j21.b1 PHD_FILE: MSMg01no276_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:35 2005CHROMAT_FILE: MSMg01no276_j21.g1 PHD_FILE: MSMg01no276_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTCCCTTATATATATTGGATATTAGTCCTC
TGTCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTTTTGACACTGTCTTTTGCCTTGCAGAAACTTTGCAATTTTAT
GAGGTCCTATTTGTCAATTCTTGATCTTACAGCACAAGCTATTGCTGTTC
TATTCAGGAATTTTTTCCCTTGTTCCCATATCTTCGAGGCTTTTTCCCAC
TTTCTCCTCTATGTTTTTCTCTGCCTCCGCCCCTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAAGAGAATAAGAATGGATCAATTTG
CATTCTTCTACATGATAACAGCCAGTTGTGCCAGCTCCATTTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGCTTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCAGTCGCTATACCAGTACCATGCAGTTTTATCGCAATTGC
TCAGTAGTACAGCTTTATGTCAGAACCAGAGGTTCTTTTATCCTTGAAAG
AGTTTTTGCTATTCTAGGTTTTTTGTTATTCCATAAGAATTTGCAGATTG
CTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTATTCAAAGTTCTTATTCCCCA
ACCCAACTTTACCCTTAAACTAATCCACGAGCATTTTAGCTTCAAGAGTG
AAATTACTCTCCTCACTGTATCTGCGTTGGAATTCTGGACAAGTCAGAGC
AAGACTAAACCAATTATTTTTAAACTCTCTTTCAGGGTGAAGAGCCACAT
CACTCCAGATATGTATGCATCTTTTCATTACAGATCTGTGATGGCTATTA
GCTCTTCAGGCTTACATCTTCATTCATGTTCTCAGGAGCGAGCCTGTTGC
TACACTTTCAAAAGCCTTTTATACAAACACCACTCGCTCTACATTTGTAG
CTACAAAAATCTCCAATTTCGGAGTGCCCTTTAAGAGGGCAAGACAAGTG
CAGGGACAAGAGTCCCTGCTTGTAGGGGACAGGGTGTAACAGTCCCAAGA
GCTCATGGCTTTTGTTTTGAATTGTCAGTGTGTTGGCCCTATGACTTAAT
TAGCATCTATTTAGTACTGGTTTTATCTGGTAGAGGAAATAGAATGGCCA
AAAATATTCACCAGCCTTTCAAAAGGAAATTCAAAAGACTCAGGATAAAA
GAACAGGAAGTCCCATTTAAACAAGCAAGACCTTTAAGAATAAAGAAAGA
GAAGGATAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGGAGTGAAGGAA
GAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_j21.g1 MSMg01no276_j21.g1 CHROMAT_FILE:
MSMg01no276_j21.g1 PHD_FILE: MSMg01no276_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:35 2005
         (291 letters)



>mm_chr10_95557321_95558010
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attattcaaagttcttattccccaacccaactttacccttaaactaatccacgagcattt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 489 attattcaaaggtcttattccccaacccaactttacccttaaactaatcca-gagcattt 431

                                                                       
Query: 61  tagcttcaagagtgaaattactctcctcactgtatctgcgttggaattctggacaagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tagcttcaagagtgaaattactctcctcactgtatctgcgttggaattctggacaagtca 371

                                                                       
Query: 121 gagcaagactaaaccaattatttttaaactctctttcagggtgaagagccacatcactcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 gagcaagactaaaccaattatttttaaactctctttcagggtgaagagccacttcactcc 311

                                                                       
Query: 181 agatatgtatgcatcttttcattacagatctgtgatggctattagctcttcaggcttaca 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 310 agatatgtatgcatcttttcattacagagctgtgatggctattagctcttcaggcttaca 251

                                                             
Query: 241 tcttcattcatgttctcaggagcgagcctgttgctacactttcaaaagcc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcttcattcatgttctcaggagcgagcctgttgctacactttcaaaagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)