BAC Information

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BAC

Clone NameMSMg01-277D03
Chromosome10 (Build37)
Map Location 32,293,754 - 32,293,913
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277D03.T7 (MSMg01no277_d03.b1)MSMg01-277D03.TJ (MSMg01no277_d03.g1)
ACCAG415165AG415166
length728805
length of high quality
(start - end)
238 (131 - 368)162 (77 - 238)
definitionCHROMAT_FILE: MSMg01no277_d03.b1 PHD_FILE: MSMg01no277_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:17 2005CHROMAT_FILE: MSMg01no277_d03.g1 PHD_FILE: MSMg01no277_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT
CAGCATCCTTAATCATCATTATAACGCAAATCAAAACAACCCTGAGATTC
CATCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAATCTGGCAGGTCCTCAGAA
AATTGGACATAGTTCTACGGGAGGATCCAGCAATACCTCACCTGGGCATA
TATCCGGAAGATGTCCCTTTCGGTAACAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTGTTTATAATAGCCAGAAAATGGAAAGAACCCAGATGCC
CCTCATCAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGACATTCCTAGGCAAATG
GTTGGACATGGAGGGCATGATCCTGAGTGAGATAACACAATCACAAAAGA
ACTCAGATGATATGTACTCACTGATAAGTGGATATTAGTCCAGAACTTAC
TATACCCGAGATATAAGAGACAATTTGTAAAACACATGAAACCTGAAGAA
GAACGAAGACCAAAGTGTGGACACTTTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTGCTACCTGCCAAGGAATTTT
AGTATTTCCAATGCCTGCATATATTACCGCATGAGAATGACCAGAATAGC
TGGTAATACTTATATCCATTTACACCCAGGTGCAAACTGAAGAAATAAAA
AGCCAGAATGAATGGCACATATAAGGGAGTGTTTCAGCNTGGNAAATNNC
AATTTTAATGTAAAGGAAGAATGCCCCCCCGGCNANAACCCCCCCCCGGG
CGTGCCGTTGGTGCAGCTTTTTTGCGTCCCCCACTTTATTTTTTCTCTAC
TTGTTCGGAGAGCGCCTTAGTTTTCCCGATACACTATCCTCTTTCTTTAT
AACTGTATACTATTTTCTGGCTTATTTCATTTATATTTACCTACCACACA
TTTTTTTACATACCTCAAGTTTTACTTTTTAAGTTTTCCTCCTCCATCTT
ACACCTCAATATCCGCCCACATTTTTTTTACCCCTCACTCTTTTTATTTG
TTCCATTTTGCCCCTTTTTTTCCCTTTTTTTCTCTTTTAAAATTTTCCAC
TTATTTAACCGCTTTTCACACTCACACAAAGATACTTACAAAACCTACAT
CTTTTGTACACACTTTCCCGTCTTTCATCCCTATTATTGACCTTCTTTTT
TCCCTCTTTCCCCTTTACCCCTTTTTTTTTCCCCCCACTTTTTTCAGTGT
TCCACCACTTATTTCCCCTCCCTTTTTTAAACCTATCTTTATACACCCAA
TCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_d03.g1 MSMg01no277_d03.g1 CHROMAT_FILE:
MSMg01no277_d03.g1 PHD_FILE: MSMg01no277_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:17 2005
         (162 letters)



>mm_chr10_32293554_32294115
          Length = 562

 Score =  286 bits (148), Expect = 4e-82
 Identities = 157/160 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgctacctgccaaggaattttagtatttccaatgcctgcatatattaccgcatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 201 atgtgctacctgccaaggaattttagtatttccaatgcctgcatagattaaggcatgaga 260

                                                                       
Query: 61  atgaccagaatagctggtaatacttatatccatttacacccaggtgcaaactgaagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaccagaatagctggtaatacttatatccatttacacccaggtgcaaactgaagaaat 320

                                                   
Query: 121 aaaaagccagaatgaatggcacatataagggagtgtttca 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaagccagaatgaatggcacatataagggagtgtttca 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)