BAC Information

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BAC

Clone NameMSMg01-279G18
Chromosome10 (Build37)
Map Location 12,699,605 - 12,849,040
singlet/doubletdoublet
Overlap geneSf3b5, Plagl1
Upstream geneUtrn, LOC665172, Stx11
Downstream gene4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G18.T7 (MSMg01no279_g18.b1)MSMg01-279G18.TJ (MSMg01no279_g18.g1)
ACCAG416791AG416792
length785775
length of high quality
(start - end)		225 (46 - 270)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no279_g18.b1 PHD_FILE: MSMg01no279_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:00 2005CHROMAT_FILE: MSMg01no279_g18.g1 PHD_FILE: MSMg01no279_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,848,824 - 12,849,040)(12,699,605 - 12,699,881)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTCTCAAGCTACTTATGACAAATAAGCTAAAACCCCATTCCT
GTTTTCCAATGCTTCTCCTCACACTATAACTGATGTTTAAAACATCTCCC
ACAAGAGAAGCACCCTCTTAAAAACCAATTTATCTAAATGCATGATGGAA
ATGGGGCAGGATAGCAGTGTTGGAGCCAGCTGTGAAAATATGGGGAGTTG
GGGGTAGGGGGGGCTGNNNNANATTNNNANNNNNTCCTGNTATTTGNTCT
TCTTCTGTTTGTGGTTCTTTTTTTTCCTCTTCCTCTTCCTCTTCNNNGGN
NNGTTTTTTTGTGNNTTCCCCANCCANNGCCCCTGGGTGNGGGGGGGGGG
GGGGGGGGGGGGGCCCCCAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGC
GGGCTGCCTCTGGTTCCCGTTCCCGTTCTGCGCTTTGTATCTGATACCTT
GCCTTGTTTTAGTCTCCTATTGTCTACTCGACCATGTTATTCTTTTCTCC
TTCCCTTTTTCCTGCTTTTACTCATATTTCGTCCATTCTTATTATTAATT
CACTACCCCCTTGTTTATTTTATCCCCCCATTTGTTCGCTTTATCTAACC
TTATAGTTCCTCTTAGTCCTTTTTCCCATTTATGACGCCCCATTATTTCT
TTTCACTTTATTCCTTTAGCTATTCCTTATCCCCTTATTTCCTACTTTTA
CCTCCATACCCCCCCCACCTTATCCTACAGTTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGGCCCATGGGGGACAAAGAG
CCTTAGCATATAACTTGATTTAAGGGGAGCTTAGGCCATATATCCAGTTG
TCGGCCTGACATAAACACACATCCTCTGTAACTGTTGAGATGGATCAGGT
GGTATAGAAGGCCATTTTCTCAAACACCTGGCATCCTGAGTTGGATCTTG
GGAACGCACCTTAAGGAAGTAGACAAGAATCAACTCAACAAAATTGTCTA
TTGATCTCTATATACACATAATACTATGGGAATACACTCCCCACATGTGT
GTGNGAGTGTTTTTTTGTCCCCCCCCCCCCCCCCCCNNNNNNNNTNNNGN
GGGNGGGTTTGTGGGNCCCCCTAAAAAAAAAAAAAAACTCGGTGGGGGGG
CGTCTTTTTATTCTTTTTTCTCCCCCCCACCCTTATCTACTCTTCTTCTT
CTTCCTTCACCTCCTTCTTTTGCACTTCCTTATTTCATAGCTTCCGTTTT
CCTTTTGTATTTCCTCCCGCATTTATAACGTTTTTCCATTCTATCTCCTC
CTCGTTGTTGCCCCTTTCAGATCGGCTTTGCCATATACGTAACCGTGTTG
TGTATTTTATTTTTTGTCGCTTTTTTCTCCCCCATTTATTACTTTAACTC
CCTTTTATTTTCCTATACTCATCTGTACGTTCCCTTTATCGCTTTCTCGT
CGATCTATCATTTTTTACCATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g18.b1 MSMg01no279_g18.b1 CHROMAT_FILE:
MSMg01no279_g18.b1 PHD_FILE: MSMg01no279_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:00 2005
         (225 letters)



>mm_chr10_12848620_12849244
          Length = 625

 Score =  397 bits (205), Expect = e-115
 Identities = 214/217 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttctcaagctacttatgacaaataagctaaaaccccattcctgttttccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaattctttttctcaagctacttatgacaaataagctaaaaccccattcctgttttccaa 362

                                                                       
Query: 65  tgcttctcctcacactataactgatgtttaaaacatctcccacaagagaagcaccctctt 124
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcttctcctcaaactgtaactgatgtttaaaacatctcccacaagagaagcaccctctt 302

                                                                       
Query: 125 aaaaaccaatttatctaaatgcatgatggaaatggggcaggatagcagtgttggagccag 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaaccaatttatctaaatgcgtgatggaaatggggcaggatagcagtgttggagccag 242

                                                
Query: 185 ctgtgaaaatatggggagttgggggtagggggggctg 221
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgtgaaaatatggggagttgggggtagggggggctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no279_g18.g1 MSMg01no279_g18.g1 CHROMAT_FILE:
MSMg01no279_g18.g1 PHD_FILE: MSMg01no279_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:00 2005
         (277 letters)



>mm_chr10_12699405_12700081
          Length = 677

 Score =  474 bits (245), Expect = e-138
 Identities = 269/277 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggcccatgggggacaaagagccttagcatataacttgatttaaggggagcttaggc 60
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 acttgacccatgggggacaaagagccttagcatataacttgatttaaggggagcttagac 260

                                                                       
Query: 61  catatatccagttgtcggcctgacataaacacacatcctctgtaactgttgagatggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatatccagttgtcggcctgacataaacacacatcctctgtaactgttgagatggatc 320

                                                                       
Query: 121 aggtggtatagaaggccattttctcaaacacctggcatcctgagttggatcttgggaacg 180
           ||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aggaggtaaagaaggccattttctcaaacaccgggcatcctgagttggatcttgggaacg 380

                                                                       
Query: 181 caccttaaggaagtagacaagaatcaactcaacaaaattgtctattgatctctatataca 240
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 381 caccttaaggaagtagacaagagtcaactcaacaaaattgtctactgatctctatataca 440

                                                
Query: 241 cataatactatgggaatacactccccacatgtgtgtg 277
           |||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cataatactatgggaataaactccccacatgtgtgtg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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