BAC Information

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BAC

Clone NameMSMg01-280B01
Chromosome10 (Build37)
Map Location 29,453,513 - 29,453,977
singlet/doubletsinglet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12
Downstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280B01.T7 (MSMg01no280_b01.b1)MSMg01-280B01.TJ (MSMg01no280_b01.g1)
ACCAG417253AG417254
length786625
length of high quality
(start - end)
467 (187 - 653)---
definitionCHROMAT_FILE: MSMg01no280_b01.b1 PHD_FILE: MSMg01no280_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:49 2005CHROMAT_FILE: MSMg01no280_b01.g1 PHD_FILE: MSMg01no280_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATATAAATTTATAAAAAATTTTTCCACCCCTCTTCNCCCCCATATATC
ACCTTTTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCCGCGGAATTCTGTGTATTTTCCAATCTGGTAACTTTTTACTGTTGCTT
GAAAGCACAAGATTAAAGACTAGTTTGACAGACCATGAAGTAAAAGAAAA
GGGATTTGATTGCTTCACTGGTTAGAAGTGTGAATAAATTGCAGAAGAAG
TCTTCCTTGCTAAAGGTTATAAACATTCTGGCCTAGCATTTCTATTGCTA
TTCATGTCCCTAATAGAGTAGGGCAAGTTCAATCTAACTTAAAGGCTCAT
TTTTTTTTCTTGTTTGTATCTTTGGTCATCATTTCTTAATAAGTTTGCTA
ATAATCTATGTGGCTGCCTTGGTGGCTGGCCTTCACAATAATGAAAATGA
GATTACAATTCACAGGGAACACATGTCATAAGCAAGCATTCCTGTGACCA
TATTGGTACTATCAGTCATCATGTTTTTTCTGCATTTTGTTACAATTTTA
GATACCTTAAATTTCACTTCGAGGTTTTAATCTGTATTATCAAGTAAAGG
GCATATAAAGAATATTTCTACGTCTGTCAGTTGTTTGGTATGAAACTTTA
ATAGATTTAGTATGTCTTCCTACTGTATAACCTATATTGCAGTGTTGATG
TGAACATTCCAGACCTGCTTTTCCTTATCCAGATTCTCTCATCCTCCATA
TAACACTAGGGCATAAATCAATCACGAAGCTTGATT
TTTAATATTATTNATTACAAAATAAACAAACTCTGCCACCCCTTATATTA
TCTCGATGAATGGTAGCCTGGGGCGCCTGCCGCTCAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGTTAAACTTGTGGTTTACATTTTGAA
TAAAGAAAATCCCTTTTTAGCTTGCTGAGTTGACTAGAAGAAAGCCTCTG
GAATAAAGCAACTTGATGTCACTTAACTACCTTACGTTTAAATTTTCATG
CAAAATAATACCCCCCTTTTTTTTAAGCGGGGGGGATTGGGGTTTTAAAT
TAAAAAAAATACCATTTTATAACCCCCCCCGGGGGAAATATATAATCTAA
TTTTTTTTTTCTCTCTATTCATTGACCGTTATTAATATCGGTTTGTTTGT
CTACTACATATAAATTACCCATATATTTCGGTTTTCTCCTATTACTATAA
ATTTCTTTTTTAATTATCAATTCGTATTATCCCTTATTTACATAAATATC
TTTTATCTTTTTTTTTTTTTCCGCATTCTACTTTTTTTATTNCAAATCAT
AACCCGTTATTTTCCATTTTCAATATAATCCCTCTCCATATCGTCACAGT
CCCATTTTTTTTTTTTTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_b01.b1 MSMg01no280_b01.b1 CHROMAT_FILE:
MSMg01no280_b01.b1 PHD_FILE: MSMg01no280_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:49 2005
         (467 letters)



>mm_chr10_29453313_29454177
          Length = 865

 Score =  868 bits (449), Expect = 0.0
 Identities = 462/467 (98%), Gaps = 2/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagtaaaagaaaagggatttgattgcttcactggttagaagtgtgaataaattgcagaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtaaaagaaaaaggatttgattgcttcactggttagaagtgtgaataaattgcagaa 260

                                                                       
Query: 61  gaagtcttccttgctaaaggttataaacattctggcctagcatttctattgctattcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtcttccttgctaaaggttataaacattctggcctagcatttctattgctattcatg 320

                                                                       
Query: 121 tccctaatagagtagggcaagttcaatctaacttaaaggctcatttttttttcttgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 321 tccctaatagagtagggcaagttcaatctaacttaaaggctcattttttt--cttgtttg 378

                                                                       
Query: 181 tatctttggtcatcatttcttaataagtttgctaataatctatgtggctgccttggtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatctttggtcatcatttcttaataagtttgctaataatctatgtggctgccttggtggc 438

                                                                       
Query: 241 tggccttcacaataatgaaaatgagattacaattcacagggaacacatgtcataagcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggccttcacaataatgaaaatgagattacaattcacagggaacacatgtcataagcaag 498

                                                                       
Query: 301 cattcctgtgaccatattggtactatcagtcatcatgttttttctgcattttgttacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cattcctgtgaccatattggtactatcagtcatcatgttttttctgcattttgttacaat 558

                                                                       
Query: 361 tttagataccttaaatttcacttcgaggttttaatctgtattatcaagtaaagggcatat 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 559 tttagataccttaaattttacttcgaggttttaatctgtattatcaagtaaagggtatat 618

                                                          
Query: 421 aaagaatatttctacgtctgtcagttgtttggtatgaaactttaata 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaagaatatttctacgtctgtcagttgtttggtatgaaactttaata 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 865
Length adjustment: 10
Effective length of query: 457
Effective length of database: 855
Effective search space:   390735
Effective search space used:   390735
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)