BAC Information

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BAC

Clone NameMSMg01-280G02
Chromosome10 (Build37)
Map Location 59,793,005 - 59,793,193
singlet/doubletsinglet
Overlap geneCdh23
Upstream geneP4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap
Downstream gene4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G02.T7 (MSMg01no280_g02.b1)MSMg01-280G02.TJ (MSMg01no280_g02.g1)
ACCAG417488AG417489
length721723
length of high quality
(start - end)
312 (46 - 357)194 (131 - 324)
definitionCHROMAT_FILE: MSMg01no280_g02.b1 PHD_FILE: MSMg01no280_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:12 2005CHROMAT_FILE: MSMg01no280_g02.g1 PHD_FILE: MSMg01no280_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGGGTCTTCTCTTCATATGGCTCTAGATAACTCCAGACCAGTG
GTTCTCAATCTGTAGGTCATGACCCCTCTTGGGGTCCACATGGCCCTTTC
ACAGGGGTTGCCTAAGACTATCAGAAAACCCAGATATTTATATTACAACC
TATAACAGTAGTAAAATTACAGTTATGGAATAGCCACAAAATAATTTTAT
GGTTGGGGAAGTCACTACAACATGAGGAACTGTATTTAAGGGATACTGTT
GTAGACTTTCATCTCAGTGAGGTCATATCACCTTGGGCAGACAGTCACAT
TTGTCAGATGTTTTTTTTTCCCCCCCCCCCCCGGGTATTGGCTAGGAGCT
TAAGTGAGTATTATGGATTGAATTGAAAAGACCAAAAATTCATATTGAAA
TTCTGAGTCCTAGGAGCTGAGGATGTAGCTCATGAGATAGAGGGTCGTCT
AGGAAGCATGAAGCTCTGGCTCATTCAGGTTCAATCCCTGGCACTGCATG
AAGCAGGTATGGCATTAACCAACACTGGAGAGGTAGAGGCAGGAGGACAG
AAAGTCTAGCTCACACTACTATGGGCTAAATGACGACCTGTGTAATTTAC
CCACTTCACTCCCCTCTTTCCGCGTGTCTGTCCTAATGGCCTCCCACACT
GATGTACGGATTTGCCCATTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACCGAGAAAATTCCAGCCAGCAAGGGAGCACCATCC
GCCTTAATTAAACAACATATTGTACCCTCAAAAACAACTGAGTTGGTTTC
TTTGGCTTGGACAATCAACCAGTCACTTGGCTATGGGCGCATTCATTAGC
ACAGTTGCCCTGATCCAGCGCTGCCCATGTGGATTGCGGTGCTCAGTACA
GGAACTCAGTCCCAGTCAGTCAGGCCCCCTTTGGTTTTATTGAGCAGCAA
TTTTCTGGTATCCACCAACCCCTCTTTTATCGCACCCCTCAAGCCTTCTC
CTGGGCACACCCTTTTTTCTTACTCCCCCCACGCGCTTGAGCCATACTTA
AGTGCACCTGAGTTTCTCTCCTGGCCTCATGGAAAGACTGAAGACTGTTG
ACATCCAAGGTCCCTCTTTTGGGTTTGCCTAGAACTTGGTTATCACTGAC
TTACCATCTCCTTGGAAAGATCCTGGTGCCCTCCTTTGACCCTTATCTGC
TAGGTACTTTAGGGAAGGTACTTCCAGCTGCCTAGGAACTGTGGTCAGAG
CATGCGTAATTGTGTTGTGGTGGGTGGGGAGTACTTGCTCATCTAACCTG
CCAGGTAATTCTCATACCGGGATTGTCACTGTCAACCGGTCCCTGGTCCG
AGATCGTTTCCCAGAGTACTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g02.g1 MSMg01no280_g02.g1 CHROMAT_FILE:
MSMg01no280_g02.g1 PHD_FILE: MSMg01no280_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:12 2005
         (194 letters)



>mm_chr10_59792804_59793397
          Length = 594

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaacaactgagttggtttctttggcttggacaatcaaccagtcacttggctatgggcgca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaacaactgagttggtttctttggcttggacaatcaaccagtcacttggctatgggcgca 331

                                                                       
Query: 62  ttcattagcacagttgccctgatccagcgctgcccatgtggattgcggtgctcagtacag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcattagcacagttgccctgatccagcgctgcccatgtggattgcggtgctcagtacag 271

                                                                       
Query: 122 gaactcagtcccagtcagtcaggccccctttggttttattgagcagcaattttctggtat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaactcagtcccagtcagtcaggccccctttggttttattgagcagcaattttctggtat 211

                    
Query: 182 ccaccaacc 190
           |||||||||
Sbjct: 210 ccaccaacc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)