BAC Information

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BAC

Clone NameMSMg01-288I17
Chromosome10 (Build37)
Map Location 29,297,737 - 29,298,089
singlet/doubletsinglet
Overlap genenone
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
Downstream geneEG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288I17.T7 (MSMg01no288_i17.b1)MSMg01-288I17.TJ (MSMg01no288_i17.g1)
ACCAG418343AG418344
length751750
length of high quality
(start - end)
686 (40 - 725)354 (381 - 734)
definitionCHROMAT_FILE: MSMg01no288_i17.b1 PHD_FILE: MSMg01no288_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:39 2005CHROMAT_FILE: MSMg01no288_i17.g1 PHD_FILE: MSMg01no288_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGAAATTCTTCCGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGAG
GTAACCCAATCACAAAAGACCACACATGATATGTACTCACTGATAAGTGG
ATATTAACCCAGAAACTTAGACTACCCAAGATACAATTTGCAAAACACAT
TAAACTCAAGAAGAAGGAAGACCAAAGTGTGGATACTTCATTCCTTCTTA
GAATGGGAAACAAACTACCCATGGAAGGAGTTACAAAGACAAAGTCCAGA
GCTGAGACAGAAGAAAGGACCATCCAGAGACTGTCCCACCCAGGGATCCA
TACCATATACAACCACCAAACCCATACACTATTGCATATGCCAGCAAGAT
TTTGCTGACAGGACCCTGATATAGTTATCTCTTGTGAGGCCTGGCAAATA
CAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACACAGGGCCCCTAA
AGAAGGAGCTAGAGATACCCAAGGAGTTAAAAGGGTCTGCAACCCTATAG
GAGGAACAACAATATAAACTGAACAGTATCCCTCAGAGCTTGTGTCTCTA
GTTGCATATGTAGCAGAGGATGGCCTAGTCGGCCATCAATGAGAGGAAAG
GCCCTTGTTCTTGTGAAAATTATATGCCCCAGTACAGGGGAATGCCAGGG
CCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGTTGTGGGGAGGGNTC
T
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGATGGAAAGAGTGCAAGAGTTCTGCCCT
AAAGGAACTTAATCTGGGCCGACATCTCTGGAAATAGACCATCACAGCAG
CAAACACGTGGTGCCTCTCCAACAAAAATATTTATGTTGTTACTGAGCTT
AAAGTGCCATATTTATTAATGATTTGACCTATCAGAATAAGAAATATTTT
CTAAGTATTACATCTCTATAGTTGTATAGTTTATATGATTGCTATTATTT
CCCACAGTTGAAAGAGAAACAAGTTTGCAATTGGTTAAGCTTGTTCATGT
CATAAAGTTTTATTATATTATCACCCCCCCCAAATATATAAAAATTCTGG
ACAAAAATTAATTACAGCTAAGCATGGAGGTACATGCCTTTATTGCCACC
ACACTCAAGAGGCAAATACAATAGGATCTCTGAGTTTAAGGGCAACCTGG
TCTACATAGTGAGTTCTGGACCAGCCAGGGCTAGATAGTAAGACCATCTT
TCCAATGAAAATAGACAAGCAAAAATTAGTGATAATGACACCTTTTGTTT
CTTTAACCACTAGGGTCATCAGTTTTCATTAATACCTTACATTTTTGACC
TGGTCACTCAAGTCTGCTTATGTGAGGCTGTAGTAAAATCATTCGCTCTA
TAAACTCACTACATTCAGGAGTCATTTTCACTAAAATAGATCCAAAAATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_i17.g1 MSMg01no288_i17.g1 CHROMAT_FILE:
MSMg01no288_i17.g1 PHD_FILE: MSMg01no288_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:39 2005
         (354 letters)



>mm_chr10_29297352_29298105
          Length = 754

 Score =  652 bits (337), Expect = 0.0
 Identities = 349/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaatatataaaaattctggacaaaaattaattacagctaagcatggaggtacatgccttt 61
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 738 aaatatataaaaattctggacaaaaattaattatagctaagcatggtggtacatgccttt 679

                                                                       
Query: 62  attgccaccacactcaagaggcaaatacaataggatctctgagtttaagggcaacctggt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 attgccaccacactcaagaggcaaatacaataggatctctgagtttaagggcaacctggt 619

                                                                       
Query: 122 ctacatagtgagttctggaccagccagggctagatagtaagaccatctttccaatgaaaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctacatagtgagttctggaccagccagggctagatagtaagaccatctttccaatgaaaa 559

                                                                       
Query: 182 tagacaagcaaaaattagtgataatgacaccttttgtttctttaaccactagggtcatca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tagacaagcaaaaattagtgataatgacaccttttgtttctttaaccactagggtcatca 499

                                                                       
Query: 242 gttttcattaataccttacatttttgacctggtcactcaagtctgcttatgtgaggctgt 301
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 498 gttttcattaataccttacatttttgacctggtcactcaagtctgcttgtgtgaggctgt 439

                                                                
Query: 302 agtaaaatcattcgctctataaactcactacattcaggagtcattttcactaa 354
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 agtaaaatcattcgctctataaactcactacatttaggagtcattttcactaa 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)