BAC Information

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BAC

Clone NameMSMg01-289P24
Chromosome10 (Build37)
Map Location 127,451,992 - 127,452,281
singlet/doubletsinglet
Overlap genePrim1
Upstream geneAvil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618
Downstream geneLOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289P24.T7 (MSMg01no289_p24.b1)MSMg01-289P24.TJ (MSMg01no289_p24.g1)
ACCAG419399AG419400
length725721
length of high quality
(start - end)		318 (47 - 364)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no289_p24.b1 PHD_FILE: MSMg01no289_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005CHROMAT_FILE: MSMg01no289_p24.g1 PHD_FILE: MSMg01no289_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCGCCCGCC
TCTGCCTTCCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCT
TTACTCGTGATTCTTATTTAAAAGTGTATTTTAATTTTTATTGTTTTTTT
AAAAAGATTTATTTATTTATTTATTATTAAAAGTGTATTTTAATTTTTAT
TGTTTTTTTAAAAAGATTTATTTATTAACAGCACAGTATAGCTGTTTTCA
GGCACACCAGAAACAGACAACAGATGGTTGTGAGCCACCATGTGGTTGCT
GGGATTTGAACTCATGTCCATTCTTACCAGNACAACGCGCTCTTAACTGC
TGAGCCATCTCTCCAGCCCCTATCCCCTGATATAAAACAAAATCTTGCTG
TGAGGCCCAGCAGAGCACATGCTTCAGCTTCCTAAATAGCGGGAACATTC
ATGAGTGTTGTTACACACAGTAAGGAGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGGCCCGGTGTATGTCTGTGTGTGTGTCTGTTTCCTCTGCTTGTCGG
TGTCCTTTGTTTGTGAGCTTTTCTTATCACTTTCTTCTTTCTTTTCCGTA
TCTTCTTGAGTTTCAATCCTGCTTCACACACCTTCAACACTCTCCACTTT
ATCCTCTTCCCCTCTCATTTCCTTG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACTATACAGAGAAACCCTG
TCTTGGGGGGAAAAAAAGAATCTTATTATTACTAATCAAAATCAATATGC
TAAAGGTCTCTCCTTTTCGGGGACAATCCTGTTGTTAAATGGATAGGTTT
TCAGAGCCCGGAAGATGCAGATGGACTCTAGAAGGAGCAGTAGGAGTCGT
CTACACCTGCGAGACCTGCAAGAACTACAATTCCCAGCAGTCCCTCCGGC
GGCGCAGGTCCATGCGCGCGCAGGGATGGAGGCCTGTCTTGTTCCCGCCA
ATTCTCGTGTCAGTCCTGGCCTGGNCTACCCTNCCTANCCCATGGAGCCA
TTTGATCCTGCGGAGCTGCCGGAGCCACCCAAGATAAATAAAAAAAGGCT
CTTTCCCTACGCCCAGTACTATCGCTGGCTCAACTATGGCGGAGGTGATG
GAGGCTGGGACGGGATGGGTAGCGGGGCTGGGAGCCGTGTGTGAGAATAC
TCTGGGCGGGATGTCCTAGGAAGAAGAGAGGCACCTTCTTCACCAATGAC
AGGCAGCGTCCTTGGAATATTTACAGCTCCTGTTTATTGTTCCCTAGCAA
ATGTGAAATTGTATGCCCCTTCAGATTACAGGCTATCTAGAACAGAGCTG
GGCACAGAGCACTCGTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_p24.g1 MSMg01no289_p24.g1 CHROMAT_FILE:
MSMg01no289_p24.g1 PHD_FILE: MSMg01no289_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:25 2005
         (290 letters)



>mm_chr10_127451792_127452481
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggactatacagagaaaccctgtcttggggggaaaaaaagaatcttattattactaatc 60
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 201 caggactatacagagaaaccctgtctcggggggaaaaaaagaatcttgttattactaatc 260

                                                                       
Query: 61  aaaatcaatatgctaaaggtctctccttttcggggacaatcctgttgttaaatggatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcaatatgctaaaggtctctccttttcggggacaatcctgttgttaaatggatagg 320

                                                                       
Query: 121 ttttcagagcccggaagatgcagatggactctagaaggagcagtaggagtcgtctacacc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttttcagagcccggaagatgcagatggactctaaaaggagcagtaggagtcgtctacacc 380

                                                                       
Query: 181 tgcgagacctgcaagaactacaattcccagcagtccctccggcggcgcaggtccatgcgc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgagatctgcaagaactacaattcccagcagtccctccggcggcgcaggtccatgcgc 440

                                                             
Query: 241 gcgcagggatggaggcctgtcttgttcccgccaattctcgtgtcagtcct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgcagggatggaggcctgtcttgttcccgccaattctcgtgtcagtcct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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