BAC Information

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BAC

Clone NameMSMg01-293M11
Chromosome10 (Build37)
Map Location 74,672,104 - 74,829,642
singlet/doubletdoublet
Overlap geneSpecc1l, LOC100040670, Adora2a, EG544707
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr
Downstream geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293M11.T7 (MSMg01no293_m11.b1)MSMg01-293M11.TJ (MSMg01no293_m11.g1)
ACCAG422133AG422134
length726748
length of high quality
(start - end)
230 (123 - 352)156 (124 - 279)
definitionCHROMAT_FILE: MSMg01no293_m11.b1 PHD_FILE: MSMg01no293_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:18 2005CHROMAT_FILE: MSMg01no293_m11.g1 PHD_FILE: MSMg01no293_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,829,413 - 74,829,642)(74,672,104 - 74,672,259)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTGTGTTCCCTTGACCATCCTGAAATTCACTCTGTAGACCAGACTGGCCT
TGAATTCAGAGTTCTACTTGCCTCTACCTCCTAACCCTAACCTTAAGCCT
GAGTCCTGGTATTAAAGGCCTGTGCCACCTCTGTACAGCTGATATTAAAG
ATTCTAAGAGGCACTTGGTATGCATGGCCTATTTCTAGAAGGCATGGAAA
AATGAATGGCTTTTGAGCAAGGGATCAGAAGTCCTAGGTTTATGGAGAAA
GTCTTCATACCAATATATAATTCATACTTTGGTCATGTGGCAGGAACCTA
TATTTGTATTTCTTGCCCCCCCCCCCCTGGGAGAAATACAAGTTCTTGGC
CAGCCTAAGACCCCCCCACGAAAAGAAGAACACACAACACACATATAACT
ACATATCCAATATGCACATGAAGTATTTAATTAATGCTTACATTACAATT
AAATAATATATGCACAAAACAAAGTTATCGATTTTTCCACATGTTTTTCT
CTTGTAGCTCAAGCTGTTCCAGAACTCTGTATGTACACAGGCTGCGCTCA
TTCTCACAGTGATTCTGTTACCTCAGCCTCCTAAGTGTGCCTCACACTTG
CCTCATTCTCTACCATGTTGAAGTACATGACTGACTAGTGCTGACTACCG
CCATAGTATTGTACAATGTGTTCGAC
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGTGAGAGTGGTTATGTGGGGATGAAGGG
AAGGGCAAGGATTTGGCCCGCATAGAGGGATAGAAGGTGGGTTAAAGGCT
GAGGCCAGACCTGGGGATGATCGCCTGCCTGGCTGGATAGAGAGAGGAGA
AGACTGGAGATATAGCTAGATGGGTAAGAATTTTGTTAAAAGATACACTA
AAATTGATATTTGCCATGAAAAGATTTAATAGTCTAATAGGCTGAACTAC
TCAACCAATGTAGAATGATTTATTAATCTGCTATGAGCAAGCTCATTAAA
AAAGTTTTCNNCTGGGTCCCCCGNAGCGGACCCCGCAGTTGATAGTATTC
TCTGCTCTTCCTTAGCCCCCCAAAATNAATCCAAAAAACCCTCTTGGTGG
CTCGCATTCCTCTGTTACTGACATCTGATGCCCCTCTCCTGGTGTGTCTG
ACGATAGTGACATCGTACCTATATTTCTATCGCTTATTAGATTGATACAG
TTCGATATATATTTAGGTACGTTTTACTTACAGTTATCACGTTCCTTGTC
TATTCACTGATATCTAACCGCCTTTATCTATTAATCGCCCCCACGACCCG
CTCTCACGACCACCTATGCACCCCTGATCTTCCCCCTTTTTTTTATCCCC
CCCCCTTTATTCCCCCCCCTTTTTCTCTTAACTGTCTCCTTGATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_m11.b1 MSMg01no293_m11.b1 CHROMAT_FILE:
MSMg01no293_m11.b1 PHD_FILE: MSMg01no293_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:18 2005
         (230 letters)



>mm_chr10_74829213_74829842
          Length = 630

 Score =  429 bits (222), Expect = e-125
 Identities = 228/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacctcctaaccctaaccttaagcctgagtcctggtattaaaggcctgtgccacctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctacctcctaaccctaaccttaagcctgagtcctggtattaaaggcctgtgccacctct 371

                                                                       
Query: 61  gtacagctgatattaaagattctaagaggcacttggtatgcatggcctatttctagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtacagctgatattaaagattctaagaggcacttggtatgcatggcctatttctagaagg 311

                                                                       
Query: 121 catggaaaaatgaatggcttttgagcaagggatcagaagtcctaggtttatggagaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 catggaaaaatgaatggcttttgagcaagggatcagaagtcctaggtttatggagaaagt 251

                                                             
Query: 181 cttcataccaatatataattcatactttggtcatgtggcaggaacctata 230
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 cttcataccaagataaaattcatactttggtcatgtggcaggaacctata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no293_m11.g1 MSMg01no293_m11.g1 CHROMAT_FILE:
MSMg01no293_m11.g1 PHD_FILE: MSMg01no293_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:18 2005
         (156 letters)



>mm_chr10_74671904_74672459
          Length = 556

 Score =  279 bits (144), Expect = 8e-80
 Identities = 153/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagggatagaaggtgggttaaaggctgaggccagacctggggatgatcgcctgcctggc 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 201 agagggatagaaggtgggttaaaggctgaggccagacctggggaggattgcctgcctagc 260

                                                                       
Query: 61  tggatagagagaggagaagactggagatatagctagatgggtaagaattttgttaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatagagagaggagaagactggagatatagctagatgggtaagaattttgttaaaaga 320

                                               
Query: 121 tacactaaaattgatatttgccatgaaaagatttaa 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacactaaaattgatatttgccatgaaaagatttaa 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)